Protein design: From the aspect of water solubility and stability
Water solubility and structural stability are key merits for proteins defined by the primary
sequence and 3D-conformation. Their manipulation represents important aspects of the …
sequence and 3D-conformation. Their manipulation represents important aspects of the …
The state-of-the-art strategies of protein engineering for enzyme stabilization
Q Liu, G Xun, Y Feng - Biotechnology advances, 2019 - Elsevier
Enzymes generated by natural recruitment and protein engineering have greatly contribute
in various sets of applications. However, their insufficient stability is a bottleneck that limit the …
in various sets of applications. However, their insufficient stability is a bottleneck that limit the …
PremPS: Predicting the impact of missense mutations on protein stability
Y Chen, H Lu, N Zhang, Z Zhu, S Wang… - PLoS computational …, 2020 - journals.plos.org
Computational methods that predict protein stability changes induced by missense
mutations have made a lot of progress over the past decades. Most of the available methods …
mutations have made a lot of progress over the past decades. Most of the available methods …
A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions
MV Shapovalov, RL Dunbrack - Structure, 2011 - cell.com
Rotamer libraries are used in protein structure determination, prediction, and design. The
backbone-dependent rotamer library consists of rotamer frequencies, mean dihedral angles …
backbone-dependent rotamer library consists of rotamer frequencies, mean dihedral angles …
BeAtMuSiC: prediction of changes in protein–protein binding affinity on mutations
The ability of proteins to establish highly selective interactions with a variety of (macro)
molecular partners is a crucial prerequisite to the realization of their biological functions. The …
molecular partners is a crucial prerequisite to the realization of their biological functions. The …
Enhancing antibody Fc heterodimer formation through electrostatic steering effects: applications to bispecific molecules and monovalent IgG
K Gunasekaran, M Pentony, M Shen, L Garrett… - Journal of Biological …, 2010 - jbc.org
Naturally occurring IgG antibodies are bivalent and monospecific. Bispecific antibodies
having binding specificities for two different antigens can be produced using recombinant …
having binding specificities for two different antigens can be produced using recombinant …
Performance of protein stability predictors
S Khan, M Vihinen - Human mutation, 2010 - Wiley Online Library
Stability is a fundamental property affecting function, activity, and regulation of biomolecules.
Stability changes are often found for mutated proteins involved in diseases. Stability …
Stability changes are often found for mutated proteins involved in diseases. Stability …
Protein design by directed evolution
C Jäckel, P Kast, D Hilvert - Annu. Rev. Biophys., 2008 - annualreviews.org
While nature evolved polypeptides over billions of years, protein design by evolutionary
mimicry is progressing at a far more rapid pace. The mutation, selection, and amplification …
mimicry is progressing at a far more rapid pace. The mutation, selection, and amplification …
Assessing computational methods for predicting protein stability upon mutation: good on average but not in the details
Methods for protein modeling and design advanced rapidly in recent years. At the heart of
these computational methods is an energy function that calculates the free energy of the …
these computational methods is an energy function that calculates the free energy of the …
Prediction of protein mutational free energy: benchmark and sampling improvements increase classification accuracy
Software to predict the change in protein stability upon point mutation is a valuable tool for a
number of biotechnological and scientific problems. To facilitate the development of such …
number of biotechnological and scientific problems. To facilitate the development of such …