Gut barrier damage and gut translocation of pathogen molecules in lupus, an impact of innate immunity (macrophages and neutrophils) in autoimmune disease

A Charoensappakit, K Sae-Khow… - International journal of …, 2022 - mdpi.com
The gut barrier is a single cell layer that separates gut micro-organisms from the host, and
gut permeability defects result in the translocation of microbial molecules from the gut into …

Bioremediation and microbial metabolism of benzo (a) pyrene

EM Ostrem Loss, JH Yu - Molecular microbiology, 2018 - Wiley Online Library
The growing release of organic contaminants into the environment due to industrial
processes has inevitably increased the incidence of their exposure to humans which often …

Neutrophil extracellular traps in severe SARS-CoV-2 infection: A possible impact of LPS and (1→ 3)-β-d-glucan in blood from gut translocation

S Saithong, N Worasilchai, W Saisorn… - Cells, 2022 - mdpi.com
Due to limited data on the link between gut barrier defects (leaky gut) and neutrophil
extracellular traps (NETs) in coronavirus disease 2019 (COVID-19), blood samples of …

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria

HA Thorpe, SC Bayliss, SK Sheppard, EJ Feil - Gigascience, 2018 - academic.oup.com
Background The concept of the “pan-genome,” which refers to the total complement of
genes within a given sample or species, is well established in bacterial genomics. Rapid …

Blood bacteria-free DNA in septic mice enhances LPS-induced inflammation in mice through macrophage response

W Kaewduangduen, P Visitchanakun… - International Journal of …, 2022 - mdpi.com
Although bacteria-free DNA in blood during systemic infection is mainly derived from
bacterial death, translocation of the DNA from the gut into the blood circulation (gut …

The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry)

M Buti, M Moretto, E Barghini, F Mascagni, L Natali… - …, 2018 - academic.oup.com
Abstract Background The genus Potentilla is closely related to that of Fragaria, the
economically important strawberry genus. Potentilla micrantha is a species that does not …

Adding context to the pneumococcal core genes using bioinformatic analysis of the intergenic pangenome of Streptococcus pneumoniae

FD Nielsen, J Møller-Jensen… - Frontiers in …, 2023 - frontiersin.org
Introduction: Whole genome sequencing offers great opportunities for linking genotypes to
phenotypes aiding in our understanding of human disease and bacterial pathogenicity …

Genomic, Phylogenetic and Physiological Characterization of the PAH-Degrading Strain Gordonia polyisoprenivorans 135

E Frantsuzova, A Bogun, O Kopylova, A Vetrova… - Biology, 2024 - mdpi.com
Simple Summary Polycyclic aromatic hydrocarbons are dangerous environmental pollutants
and can be harmful to human health due to their carcinogenicity. The strain Gordonia …

Readsynth: short-read simulation for consideration of composition-biases in reduced metagenome sequencing approaches

R Kuster, M Staton - BMC bioinformatics, 2024 - Springer
Background The application of reduced metagenomic sequencing approaches holds
promise as a middle ground between targeted amplicon sequencing and whole …

The functional determinants in the organization of bacterial genomes

Z Liu, J Feng, B Yu, Q Ma, B Liu - Briefings in Bioinformatics, 2021 - academic.oup.com
Bacterial genomes are now recognized as interacting intimately with cellular processes.
Uncovering organizational mechanisms of bacterial genomes has been a primary focus of …