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Multivariate analyses in microbial ecology
Environmental microbiology is undergoing a dramatic revolution due to the increasing
accumulation of biological information and contextual environmental parameters. This will …
accumulation of biological information and contextual environmental parameters. This will …
Rules of engagement: interspecies interactions that regulate microbial communities
Microbial communities comprise an interwoven matrix of biological diversity modified by
physical and chemical variation over space and time. Although these communities are the …
physical and chemical variation over space and time. Although these communities are the …
Crop** practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming
Background Harnessing beneficial microbes presents a promising strategy to optimize plant
growth and agricultural sustainability. Little is known to which extent and how specifically …
growth and agricultural sustainability. Little is known to which extent and how specifically …
Distinct soil microbial diversity under long-term organic and conventional farming
Low-input agricultural systems aim at reducing the use of synthetic fertilizers and pesticides
in order to improve sustainable production and ecosystem health. Despite the integral role of …
in order to improve sustainable production and ecosystem health. Despite the integral role of …
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
ABSTRACT mothur aims to be a comprehensive software package that allows users to use a
single piece of software to analyze community sequence data. It builds upon previous tools …
single piece of software to analyze community sequence data. It builds upon previous tools …
The under-recognized dominance of Verrucomicrobia in soil bacterial communities
Verrucomicrobia are ubiquitous in soil, but members of this bacterial phylum are thought to
be present at low frequency in soil, with few studies focusing specifically on verrucomicrobial …
be present at low frequency in soil, with few studies focusing specifically on verrucomicrobial …
Global patterns in bacterial diversity
Microbes are difficult to culture. Consequently, the primary source of information about a
fundamental evolutionary topic, life's diversity, is the environmental distribution of gene …
fundamental evolutionary topic, life's diversity, is the environmental distribution of gene …
Efficacy of biofertilizers: challenges to improve crop production
Different kinds of soil microorganisms belonging to several taxa of the bacteria, fungi, and
possibly, protozoa kingdoms, colonizing the rhizosphere or the plant tissues and promoting …
possibly, protozoa kingdoms, colonizing the rhizosphere or the plant tissues and promoting …
Bacteroidetes as a sensitive biological indicator of agricultural soil usage revealed by a culture-independent approach
The aim of the study was to determine the Bacteroidetes community structure in arable soils
versus wastelands in order to assess their sensitivity to agricultural soil usage. Twelve …
versus wastelands in order to assess their sensitivity to agricultural soil usage. Twelve …
Do manure-borne or indigenous soil microorganisms influence the spread of antibiotic resistance genes in manured soil?
Manure application is a common practice that not only adds nutrients and organic matter to
arable soils for crop growth, but also introduces antibiotic resistance genes (ARGs), posing a …
arable soils for crop growth, but also introduces antibiotic resistance genes (ARGs), posing a …