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CIBERSORT analysis of TCGA and METABRIC identifies subgroups with better outcomes in triple negative breast cancer
Studies have shown that the presence of tumor infiltrating lymphocytes (TILs) in Triple
Negative Breast Cancer (TNBC) is associated with better prognosis. However, the molecular …
Negative Breast Cancer (TNBC) is associated with better prognosis. However, the molecular …
Benchmarking of methods for DNA methylome deconvolution
Defining the number and abundance of different cell types in tissues is important for
understanding disease mechanisms as well as for diagnostic and prognostic purposes …
understanding disease mechanisms as well as for diagnostic and prognostic purposes …
Oncolytic immunotherapy with nivolumab in muscle-invasive bladder cancer: a phase 1b trial
There is a critical unmet need for safe and efficacious neoadjuvant treatment for cisplatin-
ineligible patients with muscle-invasive bladder cancer. Here we launched a phase 1b study …
ineligible patients with muscle-invasive bladder cancer. Here we launched a phase 1b study …
Bone marrow microenvironments that contribute to patient outcomes in newly diagnosed multiple myeloma: A cohort study of patients in the Total Therapy clinical trials
Background The tumor microenvironment (TME) is increasingly appreciated as an important
determinant of cancer outcome, including in multiple myeloma (MM). However, most …
determinant of cancer outcome, including in multiple myeloma (MM). However, most …
Genetic variation of putative myokine signaling is dominated by biological sex and sex hormones
Skeletal muscle plays an integral role in coordinating physiological homeostasis, where
signaling to other tissues via myokines allows for coordination of complex processes. Here …
signaling to other tissues via myokines allows for coordination of complex processes. Here …
Transcriptomic classification of diffuse large B-cell lymphoma identifies a high-risk activated B-cell-like subpopulation with targetable MYC dysregulation
Immunochemotherapy has been the mainstay of treatment for newly diagnosed diffuse large
B-cell lymphoma (ndDLBCL) yet is inadequate for many patients. In this work, we perform …
B-cell lymphoma (ndDLBCL) yet is inadequate for many patients. In this work, we perform …
Progress and challenge for computational quantification of tissue immune cells
Tissue immune cells have long been recognized as important regulators for the
maintenance of balance in the body system. Quantification of the abundance of different …
maintenance of balance in the body system. Quantification of the abundance of different …
Multi-omics reveal immune microenvironment alterations in multiple myeloma and its precursor stages
Tumor immune microenvironmental alterations occur early in multiple myeloma (MM)
development. In this study, we aim to systematically characterize the tumor immune …
development. In this study, we aim to systematically characterize the tumor immune …
Follicular lymphoma comprises germinal center–like and memory-like molecular subtypes with prognostic significance
A robust prognostic and biological classification for newly diagnosed follicular lymphoma
(FL) using molecular profiling remains challenging. FL tumors from patients treated in the …
(FL) using molecular profiling remains challenging. FL tumors from patients treated in the …
[PDF][PDF] Single-cell mapper (scMappR): using scRNA-seq to infer the cell-type specificities of differentially expressed genes
RNA sequencing (RNA-seq) is widely used to identify differentially expressed genes (DEGs)
and reveal biological mechanisms underlying complex biological processes. RNA-seq is …
and reveal biological mechanisms underlying complex biological processes. RNA-seq is …