Large-scale investigation of species-specific orphan genes in the human gut microbiome elucidates their evolutionary origins
Species-specific genes, also known as orphans, are ubiquitous across life's domains. In
prokaryotes, species-specific orphan genes (SSOGs) are mostly thought to originate in …
prokaryotes, species-specific orphan genes (SSOGs) are mostly thought to originate in …
Persistent, Private, and Mobile Genes: A Model for Gene Dynamics in Evolving Pangenomes
The pangenome of a species is the set of all genes carried by at least one member of the
species. In bacteria, pangenomes can be much larger than the set of genes carried by a …
species. In bacteria, pangenomes can be much larger than the set of genes carried by a …
Evolutionary dynamics of the accessory genomes of Staphylococcus aureus
Staphylococcus aureus is a ubiquitous commensal and opportunistic bacterial pathogen that
can cause a wide gamut of infections, which are exacerbated by the presence of multidrug …
can cause a wide gamut of infections, which are exacerbated by the presence of multidrug …
A universal and constant rate of gene content change traces pangenome flux to LUCA
K Trost, MR Knopp, JLE Wimmer… - FEMS microbiology …, 2024 - academic.oup.com
Prokaryotic genomes constantly undergo gene flux via lateral gene transfer, generating a
pangenome structure consisting of a conserved core genome surrounded by a more …
pangenome structure consisting of a conserved core genome surrounded by a more …
Pangenomes reveal genomic signatures of microbial adaptation to experimental soil warming
Below-ground carbon transformations represent a natural climate change mitigation
solution, but newly-acquired traits adaptive to climate stress may alter microbial climate …
solution, but newly-acquired traits adaptive to climate stress may alter microbial climate …
Large-scale investigation of orphan genes in the human gut microbiome elucidates their evolutionary origins
Orphan genes, ie, genes that lack homologs outside a given species, are ubiquitous in all
domains of life. In prokaryotes, orphans can originate (i) in the native genome via de novo …
domains of life. In prokaryotes, orphans can originate (i) in the native genome via de novo …
A simple path to complexity: horizontal gene transfer in microbial communities
P Buffard - 2023 - macau.uni-kiel.de
In nature, microbial communities are inherent components of all ecosystems, actively
sha** and being shaped by complex eco-evolutionary feedback processes. Importantly …
sha** and being shaped by complex eco-evolutionary feedback processes. Importantly …