Cell–cell communication inference and analysis in the tumour microenvironments from single-cell transcriptomics: data resources and computational strategies

L Peng, F Wang, Z Wang, J Tan, L Huang… - Briefings in …, 2022 - academic.oup.com
Carcinomas are complex ecosystems composed of cancer, stromal and immune cells.
Communication between these cells and their microenvironments induces cancer …

Spatial map** of protein composition and tissue organization: a primer for multiplexed antibody-based imaging

JW Hickey, EK Neumann, AJ Radtke, JM Camarillo… - Nature …, 2022 - nature.com
Tissues and organs are composed of distinct cell types that must operate in concert to
perform physiological functions. Efforts to create high-dimensional biomarker catalogs of …

Light‐Induced Agglomeration of Single‐Atom Platinum in Photocatalysis

N Denisov, S Qin, J Will, BN Vasiljevic… - Advanced …, 2023 - Wiley Online Library
With recent advances in the field of single‐atoms (SAs) used in photocatalysis, an
unprecedented performance of atomically dispersed co‐catalysts has been achieved …

Subcellular proteomics

JA Christopher, C Stadler, CE Martin… - Nature Reviews …, 2021 - nature.com
The eukaryotic cell is compartmentalized into subcellular niches, including membrane-
bound and membrane-less organelles. Proteins localize to these niches to fulfil their …

histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data

D Schapiro, HW Jackson, S Raghuraman, JR Fischer… - Nature …, 2017 - nature.com
Single-cell, spatially resolved omics analysis of tissues is poised to transform biomedical
research and clinical practice. We have developed an open-source, computational histology …

Seipin traps triacylglycerols to facilitate their nanoscale clustering in the endoplasmic reticulum membrane

X Prasanna, VT Salo, S Li, K Ven, H Vihinen… - PLoS …, 2021 - journals.plos.org
Seipin is a disk-like oligomeric endoplasmic reticulum (ER) protein important for lipid droplet
(LD) biogenesis and triacylglycerol (TAG) delivery to growing LDs. Here we show through …

Visualizing morphological principles for efficient photocurrent generation in organic non-fullerene acceptor blends

W Köntges, P Perkhun, J Kammerer… - Energy & …, 2020 - pubs.rsc.org
The efficiency of organic solar cells with donor polymers and non-fullerene acceptors
depends on a complex morphology. Similar chemical and electronic structures impede …

Migratory and dancing macrophage subsets in atherosclerotic lesions

S McArdle, K Buscher, Y Ghosheh, AB Pramod… - Circulation …, 2019 - Am Heart Assoc
Rationale: Macrophages are essential regulators of atherosclerosis. They secrete cytokines,
process lipoproteins and cholesterol, and take up apoptotic cells. Multiple subsets of plaque …

High dietary fat and sucrose result in an extensive and time-dependent deterioration in health of multiple physiological systems in mice

JG Burchfield, MA Kebede, CC Meoli, J Stöckli… - Journal of biological …, 2018 - ASBMB
Obesity is associated with metabolic dysfunction, including insulin resistance and
hyperinsulinemia, and with disorders such as cardiovascular disease, osteoporosis, and …

Cell aggregation is associated with enzyme secretion strategies in marine polysaccharide-degrading bacteria

G D'Souza, A Ebrahimi, A Stubbusch… - The ISME …, 2023 - academic.oup.com
Polysaccharide breakdown by bacteria requires the activity of enzymes that degrade
polymers either intra-or extra-cellularly. The latter mechanism generates a localized pool of …