Spatiotemporal omics for biology and medicine
The completion of the Human Genome Project has provided a foundational blueprint for
understanding human life. Nonetheless, understanding the intricate mechanisms through …
understanding human life. Nonetheless, understanding the intricate mechanisms through …
Categorization of 34 computational methods to detect spatially variable genes from spatially resolved transcriptomics data
In the analysis of spatially resolved transcriptomics data, detecting spatially variable genes
(SVGs) is crucial. Numerous computational methods exist, but varying SVG definitions and …
(SVGs) is crucial. Numerous computational methods exist, but varying SVG definitions and …
Dimension-agnostic and granularity-based spatially variable gene identification using BSP
Identifying spatially variable genes (SVGs) is critical in linking molecular cell functions with
tissue phenotypes. Spatially resolved transcriptomics captures cellular-level gene …
tissue phenotypes. Spatially resolved transcriptomics captures cellular-level gene …
Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST
Spatially resolved transcriptomics involves a set of emerging technologies that enable the
transcriptomic profiling of tissues with the physical location of expressions. Although a …
transcriptomic profiling of tissues with the physical location of expressions. Although a …
Map** the topography of spatial gene expression with interpretable deep learning
Spatially resolved transcriptomics technologies provide high-throughput measurements of
gene expression in a tissue slice, but the sparsity of these data complicates analysis of …
gene expression in a tissue slice, but the sparsity of these data complicates analysis of …
[HTML][HTML] Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex
Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular
anatomy of the human dorsolateral prefrontal cortex - PMC Back to Top Skip to main content NIH …
anatomy of the human dorsolateral prefrontal cortex - PMC Back to Top Skip to main content NIH …
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex
LA Huuki-Myers, A Spangler, NJ Eagles… - Science, 2024 - science.org
The molecular organization of the human neocortex historically has been studied in the
context of its histological layers. However, emerging spatial transcriptomic technologies …
context of its histological layers. However, emerging spatial transcriptomic technologies …
Evaluating spatially variable gene detection methods for spatial transcriptomics data
Background The identification of genes that vary across spatial domains in tissues and cells
is an essential step for spatial transcriptomics data analysis. Given the critical role it serves …
is an essential step for spatial transcriptomics data analysis. Given the critical role it serves …
Disparities in spatially variable gene calling highlight the need for benchmarking spatial transcriptomics methods
Identifying spatially variable genes (SVGs) is a key step in the analysis of spatially resolved
transcriptomics data. SVGs provide biological insights by defining transcriptomic differences …
transcriptomics data. SVGs provide biological insights by defining transcriptomic differences …
Spatial Transcriptomics: Biotechnologies, Computational Tools, and Neuroscience Applications
Spatial transcriptomics (ST) represents a revolutionary approach in molecular biology,
providing unprecedented insights into the spatial organization of gene expression within …
providing unprecedented insights into the spatial organization of gene expression within …