A fast likelihood method to reconstruct and visualize ancestral scenarios
The reconstruction of ancestral scenarios is widely used to study the evolution of characters
along phylogenetic trees. One commonly uses the marginal posterior probabilities of the …
along phylogenetic trees. One commonly uses the marginal posterior probabilities of the …
1970s and 'Patient 0'HIV-1 genomes illuminate early HIV/AIDS history in North America
The emergence of HIV-1 group M subtype B in North American men who have sex with men
was a key turning point in the HIV/AIDS pandemic. Phylogenetic studies have suggested …
was a key turning point in the HIV/AIDS pandemic. Phylogenetic studies have suggested …
Comparative circulation dynamics of the five main HIV types in China
The HIV epidemic in China accounts for 3% of the global HIV incidence. We compared the
patterns and determinants of interprovincial spread of the five most prevalent circulating …
patterns and determinants of interprovincial spread of the five most prevalent circulating …
Dynamics and dispersal of local human immunodeficiency virus epidemics within San Diego and across the San Diego–Tijuana Border
Background Evolutionary analyses of well-annotated human immunodeficiency virus (HIV)
sequence data can provide insights into viral transmission patterns and associated factors …
sequence data can provide insights into viral transmission patterns and associated factors …
On the importance of negative controls in viral landscape phylogeography
Phylogeographic reconstructions are becoming an established procedure to evaluate the
factors that could impact virus spread. While a discrete phylogeographic approach can be …
factors that could impact virus spread. While a discrete phylogeographic approach can be …
Estimating HIV-1 genetic diversity in Brazil through next-generation sequencing
BM Alves, JD Siqueira, IM Prellwitz… - Frontiers in …, 2019 - frontiersin.org
Approximately 36.7 million people were living with the human immunodeficiency virus (HIV)
at the end of 2016 according to UNAIDS, representing a global prevalence rate of 0.8%. In …
at the end of 2016 according to UNAIDS, representing a global prevalence rate of 0.8%. In …
Circulation of human immunodeficiency virus 1 A6 variant in the eastern border of the European Union—dynamics of the virus transmissions between Poland and …
Background The human immunodeficiency virus (HIV) type 1 A6 variant is dominating in
high-prevalence Eastern European countries, with increasing prevalence over the …
high-prevalence Eastern European countries, with increasing prevalence over the …
[BUCH][B] Phylogenetic analyses of SARS-CoV-2 B. 1.1. 7 lineage suggest a single origin followed by multiple exportation events versus convergent evolution
A Chaillon, DM Smith - 2021 - scholar.archive.org
Accepted Manuscript Page 1 Accepted Manuscript Published by Oxford University Press for
the Infectious Diseases Society of America 2021. This work is written by (a) US Government …
the Infectious Diseases Society of America 2021. This work is written by (a) US Government …
Phylodynamics of HIV in the Mexico city metropolitan region
Evolutionary analyses of viral sequences can provide insights into transmission dynamics,
which in turn can optimize prevention interventions. Here, we characterized the dynamics of …
which in turn can optimize prevention interventions. Here, we characterized the dynamics of …
Comprehensive characterization of HIV-1 molecular epidemiology and demographic history in the Brazilian region most heavily affected by AIDS
The high incidence of AIDS cases and the dominance of HIV-1 subtype C infections are two
features that distinguish the HIV-1 epidemic in the two southernmost Brazilian states (Rio …
features that distinguish the HIV-1 epidemic in the two southernmost Brazilian states (Rio …