Intrinsic disorder and functional proteomics
The recent advances in the prediction of intrinsically disordered proteins and the use of
protein disorder prediction in the fields of molecular biology and bioinformatics are reviewed …
protein disorder prediction in the fields of molecular biology and bioinformatics are reviewed …
[HTML][HTML] Protein domain identification methods and online resources
Y Wang, H Zhang, H Zhong, Z Xue - Computational and structural …, 2021 - Elsevier
Protein domains are the basic units of proteins that can fold, function, and evolve
independently. Knowledge of protein domains is critical for protein classification …
independently. Knowledge of protein domains is critical for protein classification …
Molecular physiology of SPAK and OSR1: two Ste20-related protein kinases regulating ion transport
SPAK (Ste20-related proline alanine rich kinase) and OSR1 (oxidative stress responsive
kinase) are members of the germinal center kinase VI subfamily of the mammalian Ste20 …
kinase) are members of the germinal center kinase VI subfamily of the mammalian Ste20 …
FUpred: detecting protein domains through deep-learning-based contact map prediction
Motivation Protein domains are subunits that can fold and function independently. Correct
domain boundary assignment is thus a critical step toward accurate protein structure and …
domain boundary assignment is thus a critical step toward accurate protein structure and …
Prediction of protein domain with mRMR feature selection and analysis
The domains are the structural and functional units of proteins. With the avalanche of protein
sequences generated in the postgenomic age, it is highly desired to develop effective …
sequences generated in the postgenomic age, it is highly desired to develop effective …
SWORD2: hierarchical analysis of protein 3D structures
Understanding the functions and origins of proteins requires splitting these macromolecules
into fragments that could be independent in terms of folding, activity, or evolution. For that …
into fragments that could be independent in terms of folding, activity, or evolution. For that …
Rapid protein domain assignment from amino acid sequence using predicted secondary structure
The elucidation of the domain content of a given protein sequence in the absence of
determined structure or significant sequence homology to known domains is an important …
determined structure or significant sequence homology to known domains is an important …
DomCut: prediction of inter-domain linker regions in amino acid sequences
M Suyama, O Ohara - Bioinformatics, 2003 - academic.oup.com
DomCut is a program to predict inter-domain linker regions solely by amino acid sequence
information. The prediction is made by using linker index deduced from a data set of …
information. The prediction is made by using linker index deduced from a data set of …
ThreaDom: extracting protein domain boundary information from multiple threading alignments
Motivation: Protein domains are subunits that can fold and evolve independently.
Identification of domain boundary locations is often the first step in protein folding and …
Identification of domain boundary locations is often the first step in protein folding and …
DOMpro: protein domain prediction using profiles, secondary structure, relative solvent accessibility, and recursive neural networks
Protein domains are the structural and functional units of proteins. The ability to parse
protein chains into different domains is important for protein classification and for …
protein chains into different domains is important for protein classification and for …