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[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive
Assessment of ecological status for the European Water Framework Directive (WFD) is
based on “Biological Quality Elements”(BQEs), namely phytoplankton, benthic flora, benthic …
based on “Biological Quality Elements”(BQEs), namely phytoplankton, benthic flora, benthic …
Meta‐analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment
DNA metabarcoding is increasingly used for the assessment of aquatic communities, and
numerous studies have investigated the consistency of this technique with traditional …
numerous studies have investigated the consistency of this technique with traditional …
Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses
Assessment of biodiversity using metabarcoding data, such as from bulk or environmental
DNA sampling, is becoming increasingly relevant in ecology, biodiversity sciences and …
DNA sampling, is becoming increasingly relevant in ecology, biodiversity sciences and …
[BUKU][B] A practical guide to DNA-based methods for biodiversity assessment.
This book represents a synthesis of knowledge and best practice in the field of DNA-based
biomonitoring at the time of writing. It has been written with end-users of molecular tools in …
biomonitoring at the time of writing. It has been written with end-users of molecular tools in …
Non‐specific amplification compromises environmental DNA metabarcoding with COI
Metabarcoding extra‐organismal DNA from environmental samples is now a key technique
in aquatic biomonitoring and ecosystem health assessment. Of critical consideration when …
in aquatic biomonitoring and ecosystem health assessment. Of critical consideration when …
[HTML][HTML] Towards a multisensor station for automated biodiversity monitoring
Rapid changes of the biosphere observed in recent years are caused by both small and
large scale drivers, like shifts in temperature, transformations in land-use, or changes in the …
large scale drivers, like shifts in temperature, transformations in land-use, or changes in the …
An assessment of minimum sequence copy thresholds for identifying and reducing the prevalence of artefacts in dietary metabarcoding data
LE Drake, JP Cuff, RE Young… - Methods in Ecology …, 2022 - Wiley Online Library
Metabarcoding provides a powerful tool for investigating biodiversity and trophic
interactions, but the high sensitivity of this methodology makes it vulnerable to errors …
interactions, but the high sensitivity of this methodology makes it vulnerable to errors …
Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement
While in recent years environmental DNA (eDNA) metabarcoding surveys have shown great
promise as an alternative monitoring method, the integration into existing marine monitoring …
promise as an alternative monitoring method, the integration into existing marine monitoring …