Fundamental constraints to the logic of living systems

R Solé, CP Kempes, B Corominas-Murtra… - Interface …, 2024 - royalsocietypublishing.org
It has been argued that the historical nature of evolution makes it a highly path-dependent
process. Under this view, the outcome of evolutionary dynamics could have resulted in …

Synthetic protocell biology: from reproduction to computation

RV Solé, A Munteanu… - … Transactions of the …, 2007 - royalsocietypublishing.org
Cells are the building blocks of biological complexity. They are complex systems sustained
by the coordinated cooperative dynamics of several biochemical networks. Their replication …

Growth and division of active droplets provides a model for protocells

D Zwicker, R Seyboldt, CA Weber, AA Hyman… - Nature Physics, 2017 - nature.com
It has been proposed that during the early steps in the origin of life, small droplets could
have formed via the segregation of molecules from complex mixtures by phase separation …

Synthetic cells and organelles: compartmentalization strategies

R Roodbeen, JCM Van Hest - BioEssays, 2009 - Wiley Online Library
The recent development of RNA replicating protocells and capsules that enclose complex
biosynthetic cascade reactions are encouraging signs that we are gradually getting better at …

Tailoring the shape and size of artificial cells

A Bhattacharya, NK Devaraj - ACS nano, 2019 - ACS Publications
Living cells achieve precise control of shape and size through sophisticated biochemical
machinery. However, such precision is extremely challenging to emulate in artificial cellular …

Evolution and self-assembly of protocells

RV Sole - The international journal of biochemistry & cell biology, 2009 - Elsevier
Cells define the minimal building blocks of life. How cellular life emerged and evolved
implies to cross the boundary between living and nonliving matter. Here we explore this …

Stochastic simulations of minimal self-reproducing cellular systems

F Mavelli, K Ruiz-Mirazo - Philosophical Transactions of …, 2007 - royalsocietypublishing.org
This paper is a theoretical attempt to gain insight into the problem of how self-assembling
vesicles (closed bilayer structures) could progressively turn into minimal self-producing and …

Synthetic transitions: towards a new synthesis

R Sole - Philosophical Transactions of the Royal Society …, 2016 - royalsocietypublishing.org
The evolution of life in our biosphere has been marked by several major innovations. Such
major complexity shifts include the origin of cells, genetic codes or multicellularity to the …

Theoretical conditions for the stationary reproduction of model protocells

F Mavelli, K Ruiz-Mirazo - Integrative biology, 2013 - academic.oup.com
In previous works we have explored the dynamics of chemically reacting proto-cellular
systems, under different experimental conditions and kinetic parameters, by means of our …

Dynamics of growth and form in prebiotic vesicles

T Ruiz-Herrero, TG Fai, L Mahadevan - Physical review letters, 2019 - APS
The growth, form, and division of prebiotic vesicles, membraneous bags of fluid of varying
components and shapes is hypothesized to have served as the substrate for the origin of life …