The broader sense of nonsense

ED Karousis, O Mühlemann - Trends in biochemical sciences, 2022‏ - cell.com
The term 'nonsense-mediated mRNA decay'(NMD) was initially coined to describe the
translation-dependent degradation of mRNAs harboring premature termination codons …

Nonsense-mediated mRNA decay in neuronal physiology and neurodegeneration

MP Howe, R Patani - Trends in Neurosciences, 2023‏ - cell.com
The processes of mRNA export from the nucleus and subsequent mRNA translation in the
cytoplasm are of particular relevance in eukaryotic cells. In highly polarised cells such as …

Residue-wise local quality estimation for protein models from cryo-EM maps

G Terashi, X Wang… - Nature …, 2022‏ - nature.com
An increasing number of protein structures are being determined by cryogenic electron
microscopy (cryo-EM). Although the resolution of determined cryo-EM density maps is …

New insights into no-go, non-stop and nonsense-mediated mRNA decay complexes

KT Powers, JYA Szeto, C Schaffitzel - Current Opinion in Structural Biology, 2020‏ - Elsevier
Highlights•Collided ribosomes form a unique disomal interface and are a hallmark of
slow/stalled translation.•Ribosome ubiquitination is triggered by ribosome collisions …

[HTML][HTML] Genome-scale map** of DNA damage suppressors through phenotypic CRISPR-Cas9 screens

Y Zhao, D Tabet, DR Contreras, L Lao, AN Kousholt… - Molecular cell, 2023‏ - cell.com
To maintain genome integrity, cells must accurately duplicate their genome and repair DNA
lesions when they occur. To uncover genes that suppress DNA damage in human cells, we …

[HTML][HTML] Suppression of nonsense mutations by new emerging technologies

P Morais, H Adachi, YT Yu - International journal of molecular sciences, 2020‏ - mdpi.com
Nonsense mutations often result from single nucleotide substitutions that change a sense
codon (coding for an amino acid) to a nonsense or premature termination codon (PTC) …

Messenger RNA surveillance: current understanding, regulatory mechanisms, and future implications

R Das, GK Panigrahi - Molecular Biotechnology, 2025‏ - Springer
Nonsense-mediated mRNA decay (NMD) is an evolutionarily conserved surveillance
mechanism in eukaryotes primarily deployed to ensure RNA quality control by eliminating …

The genetic architecture of phenotypic diversity in the Betta fish (Betta splendens)

W Zhang, H Wang, DYC Brandt, B Hu, J Sheng… - Science …, 2022‏ - science.org
The Betta fish displays a remarkable variety of phenotypes selected during domestication.
However, the genetic basis underlying these traits remains largely unexplored. Here, we …

No-nonsense: insights into the functional interplay of nonsense-mediated mRNA decay factors

J Mailliot, M Vivoli-Vega, C Schaffitzel - Biochemical Journal, 2022‏ - portlandpress.com
Nonsense-mediated messenger RNA decay (NMD) represents one of the main surveillance
pathways used by eukaryotic cells to control the quality and abundance of mRNAs and to …

[HTML][HTML] Protein model refinement for cryo-EM maps using AlphaFold2 and the DAQ score

G Terashi, X Wang, D Kihara - Biological Crystallography, 2023‏ - journals.iucr.org
As more protein structure models have been determined from cryogenic electron microscopy
(cryo-EM) density maps, establishing how to evaluate the model accuracy and how to …