Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses

TP Brutnell, JL Bennetzen… - Annual review of plant …, 2015 - annualreviews.org
The family of grasses encompasses the world's most important food, feed, and bioenergy
crops, yet we are only now beginning to develop the genetic resources to explore the …

Exploiting the Brachypodium Tool Box in cereal and grass research

LAJ Mur, J Allainguillaume, P Catalán… - New …, 2011 - Wiley Online Library
It is now a decade since Brachypodium distachyon (Brachypodium) was suggested as a
model species for temperate grasses and cereals. Since then transformation protocols, large …

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

SP Gordon, B Contreras-Moreira, JJ Levy… - Nature …, 2020 - nature.com
Our understanding of polyploid genome evolution is constrained because we cannot know
the exact founders of a particular polyploid. To differentiate between founder effects and post …

Brachypodium as a model for the grasses: today and the future

J Brkljacic, E Grotewold, R Scholl, T Mockler… - Plant …, 2011 - academic.oup.com
Model systems not only allow scientists to investigate complex processes that are difficult to
study in nonmodel organisms but also serve to focus community efforts and resources …

Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana

P Fransz, G Linc, CR Lee, SA Aflitos, JR Lasky… - The Plant …, 2016 - Wiley Online Library
Chromosomal inversions can provide windows onto the cytogenetic, molecular, evolutionary
and demographic histories of a species. Here we investigate a paracentric 1.17‐Mb …

Chromosome evolution in connection with repetitive sequences and epigenetics in plants

SF Li, T Su, GQ Cheng, BX Wang, X Li, CL Deng… - Genes, 2017 - mdpi.com
Chromosome evolution is a fundamental aspect of evolutionary biology. The evolution of
chromosome size, structure and shape, number, and the change in DNA composition …

Single-copy gene fluorescence in situ hybridization and genome analysis: Acc-2 loci mark evolutionary chromosomal rearrangements in wheat

TV Danilova, B Friebe, BS Gill - Chromosoma, 2012 - Springer
Fluorescence in situ hybridization (FISH) is a useful tool for physical map** of
chromosomes and studying evolutionary chromosome rearrangements. Here we report a …

A comprehensive overview of grain development in Brachypodium distachyon variety Bd21

F Guillon, C Larre, F Petipas, A Berger… - Journal of …, 2012 - academic.oup.com
A detailed and comprehensive understanding of seed reserve accumulation is of great
importance for agriculture and crop improvement strategies. This work is part of a research …

[HTML][HTML] Advances in plant chromosome genomics

J Doležel, J Vrána, P Cápal, M Kubaláková… - Biotechnology …, 2014 - Elsevier
Next generation sequencing (NGS) is revolutionizing genomics and is providing novel
insights into genome organization, evolution and function. The number of plant genomes …

Reconstructing the Evolution of Brachypodium Genomes Using Comparative Chromosome Painting

A Betekhtin, G Jenkins, R Hasterok - PloS one, 2014 - journals.plos.org
Brachypodium distachyon is a model for the temperate cereals and grasses and has a
biology, genomics infrastructure and cytogenetic platform fit for purpose. It is a member of a …