Deep learning in drug discovery: an integrative review and future challenges

H Askr, E Elgeldawi, H Aboul Ella… - Artificial Intelligence …, 2023 - Springer
Recently, using artificial intelligence (AI) in drug discovery has received much attention
since it significantly shortens the time and cost of develo** new drugs. Deep learning (DL) …

[HTML][HTML] On the road to explainable AI in drug-drug interactions prediction: A systematic review

TH Vo, NTK Nguyen, QH Kha, NQK Le - Computational and Structural …, 2022 - Elsevier
Over the past decade, polypharmacy instances have been common in multi-diseases
treatment. However, unwanted drug-drug interactions (DDIs) that might cause unexpected …

[PDF][PDF] KGNN: Knowledge Graph Neural Network for Drug-Drug Interaction Prediction.

X Lin, Z Quan, ZJ Wang, T Ma, X Zeng - IJCAI, 2020 - xuanlin1991.github.io
Drug-drug interaction (DDI) prediction is a challenging problem in pharmacology and
clinical application, and effectively identifying potential D-DIs during clinical trials is critical …

DeepPurpose: a deep learning library for drug–target interaction prediction

K Huang, T Fu, LM Glass, M Zitnik, C **ao… - Bioinformatics, 2020 - academic.oup.com
Accurate prediction of drug–target interactions (DTI) is crucial for drug discovery. Recently,
deep learning (DL) models for show promising performance for DTI prediction. However …

SSI–DDI: substructure–substructure interactions for drug–drug interaction prediction

AK Nyamabo, H Yu, JY Shi - Briefings in Bioinformatics, 2021 - academic.oup.com
A major concern with co-administration of different drugs is the high risk of interference
between their mechanisms of action, known as adverse drug–drug interactions (DDIs) …

DSN-DDI: an accurate and generalized framework for drug–drug interaction prediction by dual-view representation learning

Z Li, S Zhu, B Shao, X Zeng, T Wang… - Briefings in …, 2023 - academic.oup.com
Drug–drug interaction (DDI) prediction identifies interactions of drug combinations in which
the adverse side effects caused by the physicochemical incompatibility have attracted much …

MUFFIN: multi-scale feature fusion for drug–drug interaction prediction

Y Chen, T Ma, X Yang, J Wang, B Song, X Zeng - Bioinformatics, 2021 - academic.oup.com
Motivation Adverse drug–drug interactions (DDIs) are crucial for drug research and mainly
cause morbidity and mortality. Thus, the identification of potential DDIs is essential for …

Comprehensive evaluation of deep and graph learning on drug–drug interactions prediction

X Lin, L Dai, Y Zhou, ZG Yu, W Zhang… - Briefings in …, 2023 - academic.oup.com
Recent advances and achievements of artificial intelligence (AI) as well as deep and graph
learning models have established their usefulness in biomedical applications, especially in …

An effective self-supervised framework for learning expressive molecular global representations to drug discovery

P Li, J Wang, Y Qiao, H Chen, Y Yu… - Briefings in …, 2021 - academic.oup.com
How to produce expressive molecular representations is a fundamental challenge in
artificial intelligence-driven drug discovery. Graph neural network (GNN) has emerged as a …

SumGNN: multi-typed drug interaction prediction via efficient knowledge graph summarization

Y Yu, K Huang, C Zhang, LM Glass, J Sun… - …, 2021 - academic.oup.com
Motivation Thanks to the increasing availability of drug–drug interactions (DDI) datasets and
large biomedical knowledge graphs (KGs), accurate detection of adverse DDI using …