“Metabolic burden” explained: stress symptoms and its related responses induced by (over)expression of (heterologous) proteins in Escherichia coli

S Snoeck, C Guidi, M De Mey - Microbial Cell Factories, 2024 - Springer
Background Engineering bacterial strains to redirect the metabolism towards the production
of a specific product has enabled the development of industrial biotechnology. However …

Mutation bias and adaptation in bacteria

JS Horton, TB Taylor - Microbiology, 2023 - microbiologyresearch.org
Genetic mutation, which provides the raw material for evolutionary adaptation, is largely a
stochastic force. However, there is ample evidence showing that mutations can also exhibit …

Measuring the burden of hundreds of BioBricks defines an evolutionary limit on constructability in synthetic biology

N Radde, GA Mortensen, D Bhat, S Shah… - Nature …, 2024 - nature.com
Engineered DNA will slow the growth of a host cell if it redirects limiting resources or
otherwise interferes with homeostasis. Escape mutants that alleviate this burden can rapidly …

Automated design of thousands of nonrepetitive parts for engineering stable genetic systems

A Hossain, E Lopez, SM Halper, DP Cetnar… - Nature …, 2020 - nature.com
Engineered genetic systems are prone to failure when their genetic parts contain repetitive
sequences. Designing many nonrepetitive genetic parts with desired functionalities remains …

Engineered promoters enable constant gene expression at any copy number in bacteria

TH Segall-Shapiro, ED Sontag, CA Voigt - Nature biotechnology, 2018 - nature.com
The internal environment of growing cells is variable and dynamic, making it difficult to
introduce reliable parts, such as promoters, for genetic engineering. Here, we applied …

Simultaneous repression of multiple bacterial genes using nonrepetitive extra-long sgRNA arrays

AC Reis, SM Halper, GE Vezeau, DP Cetnar… - Nature …, 2019 - nature.com
Engineering cellular phenotypes often requires the regulation of many genes. When using
CRISPR interference, coexpressing many single-guide RNAs (sgRNAs) triggers genetic …

Optimizing multicopy chromosomal integration for stable high-performing strains

F Du, Z Li, X Li, D Zhang, F Zhang, Z Zhang… - Nature Chemical …, 2024 - nature.com
The copy number of genes in chromosomes can be modified by chromosomal integration to
construct efficient microbial cell factories but the resulting genetic systems are prone to …

Overcoming evolved resistance to population-suppressing homing-based gene drives

JM Marshall, A Buchman, HM Sánchez C, OS Akbari - Scientific reports, 2017 - nature.com
The recent development of a CRISPR-Cas9-based homing system for the suppression of
Anopheles gambiae is encouraging; however, with current designs, the slow emergence of …

Inducible expression of large gRNA arrays for multiplexed CRISPRai applications

WM Shaw, L Studená, K Roy, P Hapeta… - Nature …, 2022 - nature.com
CRISPR gene activation and inhibition (CRISPRai) has become a powerful synthetic tool for
influencing the expression of native genes for foundational studies, cellular reprograming …

CRISPR–Cas9, CRISPRi and CRISPR-BEST-mediated genetic manipulation in streptomycetes

Y Tong, CM Whitford, K Blin, TS Jørgensen, T Weber… - Nature …, 2020 - nature.com
Streptomycetes are prominent sources of bioactive natural products, but metabolic
engineering of the natural products of these organisms is greatly hindered by relatively …