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“Metabolic burden” explained: stress symptoms and its related responses induced by (over)expression of (heterologous) proteins in Escherichia coli
S Snoeck, C Guidi, M De Mey - Microbial Cell Factories, 2024 - Springer
Background Engineering bacterial strains to redirect the metabolism towards the production
of a specific product has enabled the development of industrial biotechnology. However …
of a specific product has enabled the development of industrial biotechnology. However …
Mutation bias and adaptation in bacteria
Genetic mutation, which provides the raw material for evolutionary adaptation, is largely a
stochastic force. However, there is ample evidence showing that mutations can also exhibit …
stochastic force. However, there is ample evidence showing that mutations can also exhibit …
Measuring the burden of hundreds of BioBricks defines an evolutionary limit on constructability in synthetic biology
N Radde, GA Mortensen, D Bhat, S Shah… - Nature …, 2024 - nature.com
Engineered DNA will slow the growth of a host cell if it redirects limiting resources or
otherwise interferes with homeostasis. Escape mutants that alleviate this burden can rapidly …
otherwise interferes with homeostasis. Escape mutants that alleviate this burden can rapidly …
Automated design of thousands of nonrepetitive parts for engineering stable genetic systems
Engineered genetic systems are prone to failure when their genetic parts contain repetitive
sequences. Designing many nonrepetitive genetic parts with desired functionalities remains …
sequences. Designing many nonrepetitive genetic parts with desired functionalities remains …
Engineered promoters enable constant gene expression at any copy number in bacteria
The internal environment of growing cells is variable and dynamic, making it difficult to
introduce reliable parts, such as promoters, for genetic engineering. Here, we applied …
introduce reliable parts, such as promoters, for genetic engineering. Here, we applied …
Simultaneous repression of multiple bacterial genes using nonrepetitive extra-long sgRNA arrays
Engineering cellular phenotypes often requires the regulation of many genes. When using
CRISPR interference, coexpressing many single-guide RNAs (sgRNAs) triggers genetic …
CRISPR interference, coexpressing many single-guide RNAs (sgRNAs) triggers genetic …
Optimizing multicopy chromosomal integration for stable high-performing strains
F Du, Z Li, X Li, D Zhang, F Zhang, Z Zhang… - Nature Chemical …, 2024 - nature.com
The copy number of genes in chromosomes can be modified by chromosomal integration to
construct efficient microbial cell factories but the resulting genetic systems are prone to …
construct efficient microbial cell factories but the resulting genetic systems are prone to …
Overcoming evolved resistance to population-suppressing homing-based gene drives
The recent development of a CRISPR-Cas9-based homing system for the suppression of
Anopheles gambiae is encouraging; however, with current designs, the slow emergence of …
Anopheles gambiae is encouraging; however, with current designs, the slow emergence of …
Inducible expression of large gRNA arrays for multiplexed CRISPRai applications
CRISPR gene activation and inhibition (CRISPRai) has become a powerful synthetic tool for
influencing the expression of native genes for foundational studies, cellular reprograming …
influencing the expression of native genes for foundational studies, cellular reprograming …
CRISPR–Cas9, CRISPRi and CRISPR-BEST-mediated genetic manipulation in streptomycetes
Streptomycetes are prominent sources of bioactive natural products, but metabolic
engineering of the natural products of these organisms is greatly hindered by relatively …
engineering of the natural products of these organisms is greatly hindered by relatively …