Computational modeling, formal analysis, and tools for systems biology

E Bartocci, P Lió - PLoS computational biology, 2016 - journals.plos.org
As the amount of biological data in the public domain grows, so does the range of modeling
and analysis techniques employed in systems biology. In recent years, a number of …

[HTML][HTML] Survey on mining signal temporal logic specifications

E Bartocci, C Mateis, E Nesterini, D Nickovic - Information and Computation, 2022 - Elsevier
Formal specifications play an essential role in the life-cycle of modern systems, both at the
time of their design and during their operation. Despite their importance, formal …

Specification-based monitoring of cyber-physical systems: a survey on theory, tools and applications

E Bartocci, J Deshmukh, A Donzé, G Fainekos… - Lectures on Runtime …, 2018 - Springer
Abstract The term Cyber-Physical Systems (CPS) typically refers to engineered, physical
and biological systems monitored and/or controlled by an embedded computational core …

Uppaal SMC tutorial

A David, KG Larsen, A Legay, M Mikučionis… - International journal on …, 2015 - Springer
This tutorial paper surveys the main features of Uppaal SMC, a model checking approach in
Uppaal family that allows us to reason on networks of complex real-timed systems with a …

A theory of timed automata

R Alur, DL Dill - Theoretical computer science, 1994 - Elsevier
We propose timed (finite) automata to model the behavior of real-time systems over time.
Our definition provides a simple, and yet powerful, way to annotate state-transition graphs …

Robust satisfaction of temporal logic over real-valued signals

A Donzé, O Maler - International Conference on Formal Modeling and …, 2010 - Springer
We consider temporal logic formulae specifying constraints in continuous time and space on
the behaviors of continuous and hybrid dynamical system admitting uncertain parameters …

Monitoring temporal properties of continuous signals

O Maler, D Nickovic - International Symposium on Formal Techniques in …, 2004 - Springer
In this paper we introduce a variant of temporal logic tailored for specifying desired
properties of continuous signals. The logic is based on a bounded subset of the real-time …

[КНИГА][B] The temporal logic of reactive and concurrent systems: specifications

Z Manna, A Pnueli - 1992 - books.google.com
Reactive systems are computing systems which are interactive, such as real-time systems,
operating systems, concurrent systems, control systems, etc. They are among the most …

Robustness of temporal logic specifications for continuous-time signals

GE Fainekos, GJ Pappas - Theoretical Computer Science, 2009 - Elsevier
In this paper, we consider the robust interpretation of Metric Temporal Logic (MTL) formulas
over signals that take values in metric spaces. For such signals, which are generated by …

Symbolic model checking for real-time systems

TA Henzinger, X Nicollin, J Sifakis, S Yovine - Information and computation, 1994 - Elsevier
We describe finite-state programs over real-numbered time in a guarded-command
language with real-valued clocks or, equivalently, as finite automata with real-valued clocks …