Biogeography of the Indo-Australian archipelago

DJ Lohman, M de Bruyn, T Page… - Annual Review of …, 2011 - annualreviews.org
The extraordinary species richness and endemism of the Indo-Australian Archipelago (IAA)
exists in one of the most geologically dynamic regions of the planet. The provenance of its …

Patterns and processes in plant phylogeography in the Mediterranean Basin. A review

GN Feliner - Perspectives in Plant Ecology, Evolution and …, 2014 - Elsevier
Phylogeography, born to bridge population genetics and phylogenetics in an explicit
geographic context, has provided a successful platform for unveiling species evolutionary …

RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language

S Höhna, MJ Landis, TA Heath, B Boussau… - Systematic …, 2016 - academic.oup.com
Programs for Bayesian inference of phylogeny currently implement a unique and fixed suite
of models. Consequently, users of these software packages are simultaneously forced to …

SpreaD3: interactive visualization of spatiotemporal history and trait evolutionary processes

F Bielejec, G Baele, B Vrancken… - Molecular biology …, 2016 - academic.oup.com
Abstract Model-based phylogenetic reconstructions increasingly consider spatial or
phenotypic traits in conjunction with sequence data to study evolutionary processes …

[LIVRE][B] Probabilistic historical biogeography: new models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing

NJ Matzke - 2013 - search.proquest.com
Historical biogeography has a diversity of methods for inferring ancestral geographic ranges
on phylogenies, but many of the methods have conflicting assumptions, and there is no …

The drivers of tropical speciation

BT Smith, JE McCormack, AM Cuervo, MJ Hickerson… - Nature, 2014 - nature.com
Since the recognition that allopatric speciation can be induced by large-scale
reconfigurations of the landscape that isolate formerly continuous populations, such as the …

Bayesian phylogeography finds its roots

P Lemey, A Rambaut, AJ Drummond… - PLoS computational …, 2009 - journals.plos.org
As a key factor in endemic and epidemic dynamics, the geographical distribution of viruses
has been frequently interpreted in the light of their genetic histories. Unfortunately, inference …

Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis

RH Ree, SA Smith - Systematic biology, 2008 - academic.oup.com
In historical biogeography, model-based inference methods for reconstructing the evolution
of geographic ranges on phylogenetic trees are poorly developed relative to the diversity of …

[LIVRE][B] Biogeography: an ecological and evolutionary approach

CB Cox, PD Moore, RJ Ladle - 2016 - books.google.com
Through eight successful editions, and over nearly 40 years, Biogeography: An Ecological
and Evolutionary Approach has provided a thorough and comprehensive exploration of the …

S-DIVA (Statistical Dispersal-Vicariance Analysis): a tool for inferring biogeographic histories

Y Yu, AJ Harris, X He - Molecular phylogenetics and Evolution, 2010 - Elsevier
Dispersal-Vicariance Analysis (DIVA) is one of the most widely used methods of inferring
biogeographic histories. Here we present a simple tool that complements DIVA and uses a …