The language of chromatin modification in human cancers

S Zhao, CD Allis, GG Wang - Nature Reviews Cancer, 2021 - nature.com
The genetic information of human cells is stored in the context of chromatin, which is
subjected to DNA methylation and various histone modifications. Such a 'language'of …

Biomolecular condensates in the nucleus

BR Sabari, A Dall'Agnese, RA Young - Trends in biochemical sciences, 2020 - cell.com
Nuclear processes such as DNA replication, transcription, and RNA processing each
depend on the concerted action of many different protein and RNA molecules. How …

The roles of histone deacetylases and their inhibitors in cancer therapy

G Li, Y Tian, WG Zhu - Frontiers in cell and developmental biology, 2020 - frontiersin.org
Genetic mutations and abnormal gene regulation are key mechanisms underlying
tumorigenesis. Nucleosomes, which consist of DNA wrapped around histone cores …

Methylglyoxal, a highly reactive dicarbonyl compound, in diabetes, its vascular complications, and other age-related diseases

CG Schalkwijk, CDA Stehouwer - Physiological reviews, 2020 - journals.physiology.org
The formation and accumulation of methylglyoxal (MGO), a highly reactive dicarbonyl
compound, has been implicated in the pathogenesis of type 2 diabetes, vascular …

Identification of modified peptides using localization-aware open search

F Yu, GC Teo, AT Kong, SE Haynes… - Nature …, 2020 - nature.com
Identification of post-translationally or chemically modified peptides in mass spectrometry-
based proteomics experiments is a crucial yet challenging task. We have recently introduced …

Metabolic regulation of gene expression through histone acylations

BR Sabari, D Zhang, CD Allis, Y Zhao - Nature reviews Molecular cell …, 2017 - nature.com
Eight types of short-chain Lys acylations have recently been identified on histones:
propionylation, butyrylation, 2-hydroxyisobutyrylation, succinylation, malonylation …

Insights into the post-translational modification and its emerging role in sha** the tumor microenvironment

W Li, F Li, X Zhang, HK Lin, C Xu - Signal transduction and targeted …, 2021 - nature.com
More and more in-depth studies have revealed that the occurrence and development of
tumors depend on gene mutation and tumor heterogeneity. The most important …

Regulation of chromatin and gene expression by metabolic enzymes and metabolites

X Li, G Egervari, Y Wang, SL Berger, Z Lu - Nature reviews Molecular …, 2018 - nature.com
Metabolism and gene expression, which are two fundamental biological processes that are
essential to all living organisms, reciprocally regulate each other to maintain homeostasis …

Metabolic regulation of gene expression by histone lysine β-hydroxybutyrylation

Z **e, D Zhang, D Chung, Z Tang, H Huang, L Dai, S Qi… - Molecular cell, 2016 - cell.com
Here we report the identification and verification of a β-hydroxybutyrate-derived protein
modification, lysine β-hydroxybutyrylation (Kbhb), as a new type of histone mark. Histone …

Metabolic coordination of physiological and pathological cardiac remodeling

AA Gibb, BG Hill - Circulation research, 2018 - Am Heart Assoc
Metabolic pathways integrate to support tissue homeostasis and to prompt changes in cell
phenotype. In particular, the heart consumes relatively large amounts of substrate not only to …