Improving the reporting of metagenomic virome-scale data

WS Chang, E Harvey, JE Mahar, C Firth, M Shi… - Communications …, 2024 - nature.com
Over the last decade metagenomic sequencing has facilitated an increasing number of
virome-scale studies, leading to an exponential expansion in understanding of virus …

Genes, inflammatory response, tolerance, and resistance to virus infections in migratory birds, bats, and rodents

PDC Pereira, DG Diniz, ER da Costa… - Frontiers in …, 2023 - frontiersin.org
Normally, the host immunological response to viral infection is coordinated to restore
homeostasis and protect the individual from possible tissue damage. The two major …

Decoding the RNA viromes in shrew lungs along the eastern coast of China

JT Zhang, ZY Hu, F Tang, YT Liu, WL Tan… - npj Biofilms and …, 2024 - nature.com
Shrews being insectivores, serve as natural reservoirs for a wide array of zoonotic viruses,
including the recently discovered Langya henipavirus (LayV) in China in 2018. It is crucial to …

The ecology of viruses in urban rodents with a focus on SARS-CoV-2

AM Fisher, G Airey, Y Liu, M Gemmell… - Emerging Microbes & …, 2023 - Taylor & Francis
Wild animals are naturally infected with a range of viruses, some of which may be zoonotic.
During the human COVID pandemic there was also the possibility of rodents acquiring …

[HTML][HTML] Viruses of freshwater mussels during mass mortality events in Oregon and Washington, USA

JC Richard, E Blevins, CD Dunn, EM Leis, TL Goldberg - Viruses, 2023 - mdpi.com
Freshwater mussels (Unionida) are globally imperiled, in part due to largely unexplained
mass mortality events (MMEs). While recent studies have begun to investigate the possibility …

Molecular ecology of microbiomes in the wild: common pitfalls, methodological advances and future directions

NM Fountain‐Jones, T Giraud, L Zinger, H Bik… - Molecular …, 2024 - Wiley Online Library
The study of microbiomes across organisms and environments has become a prominent
focus in molecular ecology. This perspective article explores common challenges …

Using archived and biocollection samples towards deciphering the DNA virus diversity associated with rodent species in the families cricetidae and heteromyidae

MC Lund, BB Larsen, DM Rowsey, HW Otto… - Virology, 2023 - Elsevier
Rodentia is the most speciose order of mammals, and they are known to harbor a wide
range of viruses. Although there has been significant research on zoonotic viruses in …

Map** the heterogeneous removal landscape of wastewater virome in effluents of different advanced wastewater treatment systems of swine farm

J **ng, H Gao, G Liu, X Cao, J Zhong, S Xu, Y Li… - Water Research, 2024 - Elsevier
In advanced wastewater treatment plants on pig farms, meticulous design aims to eliminate
intrinsic pollutants such as organic matter, heavy metals, and biological contaminants. In our …

The diverse liver viromes of Australian geckos and skinks are dominated by hepaciviruses and picornaviruses and reflect host taxonomy and habitat

JE Mahar, M Wille, E Harvey, CC Moritz… - Virus …, 2024 - academic.oup.com
Lizards have diverse ecologies and evolutionary histories, and represent a promising group
to explore how hosts shape virome structure and virus evolution. Yet, little is known about …

Community structure of heritable viruses in a Drosophila-parasitoids complex

J Varaldi, D Lepetit, N Burlet, C Faber… - Peer Community …, 2024 - peercommunityjournal.org
The diversity and phenotypic impacts related to the presence of heritable bacteria in insects
have been extensively studied in the last decades. On the contrary, heritable viruses have …