Principles of protein− protein interactions: what are the preferred ways for proteins to interact?

O Keskin, A Gursoy, B Ma, R Nussinov - Chemical reviews, 2008 - ACS Publications
Proteins are the working horse of the cellular machinery. They are responsible for diverse
functions ranging from molecular motors to signaling. They catalyze reactions, transport …

Structure, function and applications of carbonic anhydrase isozymes

MI Hassan, B Shajee, A Waheed, F Ahmad… - Bioorganic & medicinal …, 2013 - Elsevier
The carbonic anhydrases enzymes (CAs, EC 4.2. 1.1) are zinc containing metalloproteins,
which efficiently catalyse the reversible conversion of carbon dioxide to bicarbonate and …

A structural biology community assessment of AlphaFold2 applications

M Akdel, DEV Pires, EP Pardo, J Jänes… - Nature Structural & …, 2022 - nature.com
Most proteins fold into 3D structures that determine how they function and orchestrate the
biological processes of the cell. Recent developments in computational methods for protein …

Inference of macromolecular assemblies from crystalline state

E Krissinel, K Henrick - Journal of molecular biology, 2007 - Elsevier
We discuss basic physical–chemical principles underlying the formation of stable
macromolecular complexes, which in many cases are likely to be the biological units …

Protein–protein interactions: General trends in the relationship between binding affinity and interfacial buried surface area

J Chen, N Sawyer, L Regan - Protein Science, 2013 - Wiley Online Library
Protein–protein interactions play key roles in many cellular processes and their affinities and
specificities are finely tuned to the functions they perform. Here, we present a study on the …

Stock-based detection of protein oligomeric states in jsPISA

E Krissinel - Nucleic acids research, 2015 - academic.oup.com
A new version of the popular software PISA for the analysis of macromolecular interfaces
and identification of biological assemblies (complexes) from macromolecular crystal …

Structural characterisation and functional significance of transient protein–protein interactions

IMA Nooren, JM Thornton - Journal of molecular biology, 2003 - Elsevier
Protein–protein complexes that dissociate and associate readily, often depending on the
physiological condition or environment, play an important role in many biological processes …

Protein–protein interaction and quaternary structure

J Janin, RP Bahadur, P Chakrabarti - Quarterly reviews of biophysics, 2008 - cambridge.org
Protein–protein recognition plays an essential role in structure and function. Specific non-
covalent interactions stabilize the structure of macromolecular assemblies, exemplified in …

First structures of an active bacterial tyrosinase reveal copper plasticity

M Sendovski, M Kanteev, VS Ben-Yosef, N Adir… - Journal of molecular …, 2011 - Elsevier
Tyrosinase is a member of the type 3 copper enzyme family that is involved in the production
of melanin in a wide range of organisms. The crystal structures of a tyrosinase from Bacillus …

Crystal contacts as nature's docking solutions

E Krissinel - Journal of computational chemistry, 2010 - Wiley Online Library
The assumption that crystal contacts reflect natural macromolecular interactions makes a
basis for many studies in structural biology. However, the crystal state may correspond to a …