Metal ion modeling using classical mechanics

P Li, KM Merz Jr - Chemical reviews, 2017 - ACS Publications
Metal ions play significant roles in numerous fields including chemistry, geochemistry,
biochemistry, and materials science. With computational tools increasingly becoming …

The roles of intracellular proteolysis in cardiac ischemia–reperfusion injury

B Hartley, W Bassiouni, R Schulz, O Julien - Basic Research in Cardiology, 2023 - Springer
Ischemic heart disease remains a leading cause of human mortality worldwide. One form of
ischemic heart disease is ischemia–reperfusion injury caused by the reintroduction of blood …

Guide to receptors and channels (GRAC)

SPH Alexander, A Mathie… - British journal of …, 2011 - Wiley Online Library
Abstract The Fifth Edition of the 'Guide to Receptors and Channels' is a compilation of the
major pharmacological targets divided into seven sections: G protein‐coupled receptors …

The concise guide to PHARMACOLOGY 2013/14: enzymes

SPH Alexander, HE Benson… - British Journal of …, 2013 - Wiley Online Library
Abstract The Concise Guide to PHARMACOLOGY 2013/14 provides concise overviews of
the key properties of over 2000 human drug targets with their pharmacology, plus links to an …

Polarizable molecular dynamics simulation of Zn (II) in water using the AMOEBA force field

JC Wu, JP Piquemal, R Chaudret… - Journal of chemical …, 2010 - ACS Publications
The hydration free energy, structure, and dynamics of the zinc divalent cation are studied
using a polarizable force field in molecular dynamics simulations. Parameters for the Zn2+ …

[HTML][HTML] High levels of soluble CD73 unveil resistance to BRAF inhibitors in melanoma cells

C Giraulo, L Orlando, E Morretta, A Voli… - Biomedicine & …, 2024 - Elsevier
Melanoma cells express high levels of CD73 that produce extracellular immunosuppressive
adenosine. Changes in the CD73 expression occur in response to tumor environmental …

Recent opportunities in matrix metalloproteinase inhibitor drug design for cancer

Y Zhong, YT Lu, Y Sun, ZH Shi, NG Li… - Expert opinion on …, 2018 - Taylor & Francis
Introduction: The overexpression of matrix metalloproteinase (MMP) plays an important role
in the context of tumor invasion and metastasis, and MMP-2 has been characterized as the …

Transition metal ion interactions with disordered amyloid-β peptides in the pathogenesis of Alzheimer's disease: insights from computational chemistry studies

B Strodel, O Coskuner-Weber - Journal of chemical information …, 2019 - ACS Publications
Monomers and oligomers of the amyloid-β peptide aggregate to form the fibrils found in the
brains of Alzheimer's disease patients. These monomers and oligomers are largely …

VFFDT: a new software for preparing AMBER force field parameters for metal-containing molecular systems

S Zheng, Q Tang, J He, S Du, S Xu… - Journal of chemical …, 2016 - ACS Publications
Force fields are fundamental to molecular dynamics simulations. However, the
incompleteness of force field parameters has been a long-standing problem, especially for …

Data-independent acquisition proteomics and N-terminomics methods reveal alterations in mitochondrial function and metabolism in ischemic-reperfused hearts

B Hartley, W Bassiouni, A Roczkowsky… - Journal of Proteome …, 2024 - ACS Publications
Myocardial ischemia-reperfusion (IR)(stunning) injury triggers changes in the proteome and
degradome of the heart. Here, we utilize quantitative proteomics and comprehensive …