Similarity search for scientific workflows

J Starlinger, B Brancotte… - Proceedings of the …, 2014 - inria.hal.science
With the increasing popularity of scientific workflows, public repositories are gaining
importance as a means to share, find, and reuse such workflows. As the sizes of these …

Investigating clinical care pathways correlated with outcomes

GT Lakshmanan, S Rozsnyai, F Wang - … 2013, Bei**g, China, August 26-30 …, 2013 - Springer
Clinical care pathway analysis is the process of discovering how clinical activities impact
patients in their care journeys, and uses the discovered knowledge for various applications …

SWORTS: a scientific workflow retrieval approach by learning textual and structural semantics

Y Gu, J Cao, S Qian, W Guan - IEEE Transactions on Services …, 2023 - ieeexplore.ieee.org
Finding scientific workflow models that can be reused or repurposed from public repositories
is becoming popular in the scientific community. Currently, the retrieval approaches for …

Scientific workflow clustering and recommendation leveraging layer hierarchical analysis

Z Zhou, Z Cheng, LJ Zhang… - IEEE Transactions on …, 2016 - ieeexplore.ieee.org
This article proposes an approach for identifying and recommending scientific workflows for
reuse and repurposing. Specifically, a scientific workflow is represented as a layer hierarchy …

Effective and efficient similarity search in scientific workflow repositories

J Starlinger, S Cohen-Boulakia, S Khanna… - Future Generation …, 2016 - Elsevier
Scientific workflows have become a valuable tool for large-scale data processing and
analysis. This has led to the creation of specialized online repositories to facilitate workflow …

MANSOR: a module alignment method based on neighbor information for scientific workflow

Y Gu, J Cao, S Qian, N Zhu… - … and Computation: Practice …, 2024 - Wiley Online Library
Finding similar scientific workflow modules that can substitute essential components of the
privacy workflows from public repositories to create a personalized workflow is growing in …

MAESTRO: a lightweight ontology-based framework for composing and analyzing script-based scientific experiments

LG Dias, B Lopes, D de Oliveira - Knowledge and Information Systems, 2024 - Springer
Over the last decades, there has been a rapid growth in the number of scientific experiments
implemented as computational simulations. These experiments typically consist of multiple …

Layer decomposition: An effective structure-based approach for scientific workflow similarity

J Starlinger, S Cohen-Boulakia… - 2014 IEEE 10th …, 2014 - ieeexplore.ieee.org
Scientific workflows have become a valuable tool for large-scale data processing and
analysis. This has led to the creation of specialized online repositories to facilitate workflow …

(Re) use in public scientific workflow repositories

J Starlinger, S Cohen-Boulakia, U Leser - Scientific and Statistical …, 2012 - Springer
Scientific workflows help in designing, managing, monitoring, and executing in-silico
experiments. Since scientific workflows often are complex, sharing them by means of public …

Classification of bioinformatics workflows using weighted versions of partitioning and hierarchical clustering algorithms

E Lord, AB Diallo, V Makarenkov - BMC bioinformatics, 2015 - Springer
Background Workflows, or computational pipelines, consisting of collections of multiple
linked tasks are becoming more and more popular in many scientific fields, including …