Portable nanopore-sequencing technology: Trends in development and applications

P Chen, Z Sun, J Wang, X Liu, Y Bai, J Chen… - Frontiers in …, 2023 - frontiersin.org
Sequencing technology is the most commonly used technology in molecular biology
research and an essential pillar for the development and applications of molecular biology …

[HTML][HTML] A deep dive into genome assemblies of non-vertebrate animals

N Guiglielmoni, R Rivera-Vicéns… - Peer Community …, 2022 - peercommunityjournal.org
Non-vertebrate species represent about 95% of known metazoan (animal) diversity. They
remain to this day relatively unexplored genetically, but understanding their genome …

Strainy: phasing and assembly of strain haplotypes from long-read metagenome sequencing

E Kazantseva, A Donmez, M Frolova, M Pop… - Nature …, 2024 - nature.com
Bacterial species in microbial communities are often represented by mixtures of strains,
distinguished by small variations in their genomes. Short-read approaches can be used to …

HairSplitter: haplotype assembly from long, noisy reads

R Faure, D Lavenier, JF Flot - Peer Community Journal, 2024 - peercommunityjournal.org
Motivation: Long-read assemblers face challenges in discerning closely related viral or
bacterial strains, often collapsing similar strains into a single sequence. This limitation has …

A comparative study of HiCanu and hifiasm

Y Wang - Proceedings of the 2022 5th International Conference …, 2022 - dl.acm.org
The recent development of Hifi sequencing has greatly improved people's understanding of
genomics. Hifi reads provide a more accurate and complete picture than traditional long …

Haplotype phasing from long reads with ASP: a flexible optimization approach

C Delahaye - 2022 - theses.hal.science
Each chromosome of a di-or polyploid organism has several haplotypes, which are highly
similar but diverge on a certain number of positions. However, most of the reference …

Využití sekvenačních metod pro studium mikrobiálních komunit:(meta) genomové assembly a populační genomika u bakterií

M Vosyka - 2024 - dspace.cuni.cz
Sekvenace DNA z mikrobiálních komunit umožňuje kromě taxonomické profilace přítomných
mikrobiálních druhů také studium vnitropopulační ge-netické variability. Její popis je …