nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes

LM Weber, A Saha, A Datta, KD Hansen… - Nature …, 2023 - nature.com
Feature selection to identify spatially variable genes or other biologically informative genes
is a key step during analyses of spatially-resolved transcriptomics data. Here, we propose …

MAPLE: a hybrid framework for multi-sample spatial transcriptomics data

C Allen, Y Chang, Q Ma, D Chung - bioRxiv, 2022 - biorxiv.org
Motivation The advent of high throughput spatial transcriptomics (HST) technologies has
allowed for characterization of spatially and genetically distinct cell sub-populations in tissue …

A bayesian multivariate mixture model for spatial transcriptomics data

C Allen, Y Chang, B Neelon, W Chang, HJ Kim, Z Li… - bioRxiv, 2021 - biorxiv.org
High throughput spatial transcriptomics (HST) is a rapidly emerging class of experimental
technologies that allow for profiling gene expression in tissue samples at or near single-cell …

Bayesian Models for High Throughput Spatial Transcriptomics

C Allen - 2022 - rave.ohiolink.edu
High throughput spatial transcriptomics (HST) is a rapidly emerging class of experimental
technologies that allow for profiling gene expression in tissue samples at or near single-cell …