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[HTML][HTML] Fatty acid overproduction by gut commensal microbiota exacerbates obesity
Although recent studies have highlighted the impact of gut microbes on the progression of
obesity and its comorbidities, it is not fully understood how these microbes promote these …
obesity and its comorbidities, it is not fully understood how these microbes promote these …
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing
A perfect bacterial genome assembly is one where the assembled sequence is an exact
match for the organism's genome—each replicon sequence is complete and contains no …
match for the organism's genome—each replicon sequence is complete and contains no …
[HTML][HTML] ABO genotype alters the gut microbiota by regulating GalNAc levels in pigs
H Yang, J Wu, X Huang, Y Zhou, Y Zhang, M Liu, Q Liu… - Nature, 2022 - nature.com
The composition of the intestinal microbiome varies considerably between individuals and is
correlated with health. Understanding the extent to which, and how, host genetics …
correlated with health. Understanding the extent to which, and how, host genetics …
Ten common issues with reference sequence databases and how to mitigate them
Metagenomic sequencing has revolutionized our understanding of microbiology. While
metagenomic tools and approaches have been extensively evaluated and benchmarked, far …
metagenomic tools and approaches have been extensively evaluated and benchmarked, far …
MOB-suite: software tools for clustering, reconstruction and ty** of plasmids from draft assemblies
Large-scale bacterial population genetics studies are now routine due to cost-effective
Illumina short-read sequencing. However, analysing plasmid content remains difficult due to …
Illumina short-read sequencing. However, analysing plasmid content remains difficult due to …
Complete, closed bacterial genomes from microbiomes using nanopore sequencing
Microbial genomes can be assembled from short-read sequencing data, but the assembly
contiguity of these metagenome-assembled genomes is constrained by repeat elements …
contiguity of these metagenome-assembled genomes is constrained by repeat elements …
Unicycler: resolving bacterial genome assemblies from short and long sequencing reads
The Illumina DNA sequencing platform generates accurate but short reads, which can be
used to produce accurate but fragmented genome assemblies. Pacific Biosciences and …
used to produce accurate but fragmented genome assemblies. Pacific Biosciences and …
Fitness Features Involved in the Biocontrol Interaction of Pseudomonas chlororaphis With Host Plants: The Case Study of PcPCL1606
E Arrebola, S Tienda, C Vida, A de Vicente… - Frontiers in …, 2019 - frontiersin.org
The goal of this mini review is to summarize the relevant contribution of some beneficial
traits to the behavior of the species Pseudomonas chlororaphis, and using that information …
traits to the behavior of the species Pseudomonas chlororaphis, and using that information …
Mutant phenotypes for thousands of bacterial genes of unknown function
One-third of all protein-coding genes from bacterial genomes cannot be annotated with a
function. Here, to investigate the functions of these genes, we present genome-wide mutant …
function. Here, to investigate the functions of these genes, we present genome-wide mutant …
Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae
Pangenomes provide access to an accurate representation of the genetic diversity of
species, both in terms of sequence polymorphisms and structural variants (SVs). Here we …
species, both in terms of sequence polymorphisms and structural variants (SVs). Here we …