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Enablers and challenges of spatial omics, a melting pot of technologies
Spatial omics has emerged as a rapidly growing and fruitful field with hundreds of
publications presenting novel methods for obtaining spatially resolved information for any …
publications presenting novel methods for obtaining spatially resolved information for any …
AI analysis of super-resolution microscopy: Biological discovery in the absence of ground truth
Super-resolution microscopy, or nanoscopy, enables the use of fluorescent-based molecular
localization tools to study molecular structure at the nanoscale level in the intact cell …
localization tools to study molecular structure at the nanoscale level in the intact cell …
A data portal for providing standardized annotations for cryo-electron tomography
U Ermel, A Cheng, JX Ni, J Gadling… - Nature …, 2024 - nature.com
We present the cryoET Data Por-tal (https://cryoetdataportal. czscience. com/), containing
annotated cryoET datasets in standardized formats, as a resource for the cryoET community …
annotated cryoET datasets in standardized formats, as a resource for the cryoET community …
Cell Painting Gallery: an open resource for image-based profiling
Image-based or morphological profiling is a rapidly expanding field wherein cells are
'profiled'by extracting hundreds to thousands of unbiased, quantitative features from images …
'profiled'by extracting hundreds to thousands of unbiased, quantitative features from images …
Image processing tools for petabyte-scale light sheet microscopy data
Light sheet microscopy is a powerful technique for high-speed three-dimensional imaging of
subcellular dynamics and large biological specimens. However, it often generates datasets …
subcellular dynamics and large biological specimens. However, it often generates datasets …
WebAtlas pipeline for integrated single-cell and spatial transcriptomic data
Single-cell and spatial transcrip-tomics illuminate complementary features of tissues.
Computational integration can synergize these technologies to resolve cell types and …
Computational integration can synergize these technologies to resolve cell types and …
SpatialData: an open and universal data framework for spatial omics
Spatially resolved omics technologies are transforming our understanding of biological
tissues. However, the handling of uni-and multimodal spatial omics datasets remains a …
tissues. However, the handling of uni-and multimodal spatial omics datasets remains a …
Opportunities and challenges for deep learning in cell dynamics research
The growth of artificial intelligence (AI) has led to an increase in the adoption of computer
vision and deep learning (DL) techniques for the evaluation of microscopy images and …
vision and deep learning (DL) techniques for the evaluation of microscopy images and …
[HTML][HTML] Thirty years of the DICOM standard
M Larobina - Tomography, 2023 - mdpi.com
Digital Imaging and Communications in Medicine (DICOM) is an international standard that
defines a format for storing medical images and a protocol to enable and facilitate data …
defines a format for storing medical images and a protocol to enable and facilitate data …
EMBL's European bioinformatics Institute (EMBL-EBI) in 2022
Abstract The European Molecular Biology Laboratory's European Bioinformatics Institute
(EMBL-EBI) is one of the world's leading sources of public biomolecular data. Based at the …
(EMBL-EBI) is one of the world's leading sources of public biomolecular data. Based at the …