New hopes from old drugs: revisiting DNA-binding small molecules as anticancer agents

K Gurova - Future oncology, 2009 - Taylor & Francis
Most of the anticancer chemotherapeutic drugs that are broadly and successfully used today
are DNA-damaging agents. Targeting of DNA has been proven to cause relatively potent …

The role of water in protein-DNA recognition

B Jayaram, T Jain - Annu. Rev. Biophys. Biomol. Struct., 2004 - annualreviews.org
▪ Abstract Is it by design or by default that water molecules are observed at the interfaces of
some protein-DNA complexes? Both experimental and theoretical studies on the …

[ΒΙΒΛΙΟ][B] Principles of nucleic acid structure

S Neidle, M Sanderson - 2021 - books.google.com
Principles of Nucleic Acid Structure, Second Edition, provides the most complete and
concise summary of underlying principles and approaches to studying nucleic acid structure …

Protein–DNA interactions: amino acid conservation and the effects of mutations on binding specificity

NM Luscombe, JM Thornton - Journal of molecular biology, 2002 - Elsevier
We investigate the conservation of amino acid residue sequences in 21 DNA-binding
protein families and study the effects that mutations have on DNA-sequence recognition …

An overview of the optical and electrochemical methods for detection of DNA-drug interactions

M Aleksić, V Kapetanović - Acta Chimica Slovenica, 2014 - farfar.pharmacy.bg.ac.rs
A large number of inorganic and organic compounds is able to bind to DNA and form
complexes. Among them, drugs are very important, especially chemotherapeutics. This …

Docking studies on DNA intercalators

Y Gilad, H Senderowitz - Journal of chemical information and …, 2014 - ACS Publications
DNA is an important target for the treatment of multiple pathologies, most notably cancer. In
particular, DNA intercalators have often been used as anticancer drugs. However, despite …

Pharmacogenomic study using bio-and nanobioelectrochemistry: Drug–DNA interaction

M Hasanzadeh, N Shadjou - Materials Science and Engineering: C, 2016 - Elsevier
Small molecules that bind genomic DNA have proven that they can be effective anticancer,
antibiotic and antiviral therapeutic agents that affect the well-being of millions of people …

Multiple liquid crystalline geometries of highly compacted nucleic acid in a dsRNA virus

SL Ilca, X Sun, K El Omari, A Kotecha, F de Haas… - Nature, 2019 - nature.com
Characterizing the genome of mature virions is pivotal to understanding the highly dynamic
processes of virus assembly and infection. Owing to the different cellular fates of DNA and …

Understanding the sequence-dependence of DNA groove dimensions: implications for DNA interactions

C Oguey, N Foloppe, B Hartmann - PloS one, 2010 - journals.plos.org
Background The B-DNA major and minor groove dimensions are crucial for DNA-protein
interactions. It has long been thought that the groove dimensions depend on the DNA …

A deep learning-based method for the prediction of DNA interacting residues in a protein

S Patiyal, A Dhall, GPS Raghava - Briefings in Bioinformatics, 2022 - academic.oup.com
DNA–protein interaction is one of the most crucial interactions in the biological system,
which decides the fate of many processes such as transcription, regulation and splicing of …