A comprehensive survey on deep graph representation learning

W Ju, Z Fang, Y Gu, Z Liu, Q Long, Z Qiao, Y Qin… - Neural Networks, 2024 - Elsevier
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …

Inductive graph alignment prompt: bridging the gap between graph pre-training and inductive fine-tuning from spectral perspective

Y Yan, P Zhang, Z Fang, Q Long - … of the ACM Web Conference 2024, 2024 - dl.acm.org
The" Graph pre-training and fine-tuning" paradigm has significantly improved Graph Neural
Networks (GNNs) by capturing general knowledge without manual annotations for …

Towards graph contrastive learning: A survey and beyond

W Ju, Y Wang, Y Qin, Z Mao, Z **ao, J Luo… - arxiv preprint arxiv …, 2024 - arxiv.org
In recent years, deep learning on graphs has achieved remarkable success in various
domains. However, the reliance on annotated graph data remains a significant bottleneck …

A survey on graph neural network acceleration: Algorithms, systems, and customized hardware

S Zhang, A Sohrabizadeh, C Wan, Z Huang… - arxiv preprint arxiv …, 2023 - arxiv.org
Graph neural networks (GNNs) are emerging for machine learning research on graph-
structured data. GNNs achieve state-of-the-art performance on many tasks, but they face …

Harnessing Heterogeneous Information Networks: A systematic literature review

L Outemzabet, N Gaud, A Bertaux, C Nicolle… - Computer Science …, 2024 - Elsevier
The integration of multiple heterogeneous data into graph models has been the subject of
extensive research in recent years. Harnessing these resulting Heterogeneous Information …

Biorag: A rag-llm framework for biological question reasoning

C Wang, Q Long, M **ao, X Cai, C Wu, Z Meng… - arxiv preprint arxiv …, 2024 - arxiv.org
The question-answering system for Life science research, which is characterized by the
rapid pace of discovery, evolving insights, and complex interactions among knowledge …

Unveiling delay effects in traffic forecasting: a perspective from spatial-temporal delay differential equations

Q Long, Z Fang, C Fang, C Chen, P Wang… - Proceedings of the ACM …, 2024 - dl.acm.org
Traffic flow forecasting is a fundamental research issue for transportation planning and
management, which serves as a canonical and typical example of spatial-temporal …

Polarized graph neural networks

Z Fang, L Xu, G Song, Q Long, Y Zhang - Proceedings of the ACM web …, 2022 - dl.acm.org
Despite the recent success of Message-passing Graph Neural Networks (MP-GNNs), the
strong inductive bias of homophily limits their ability to generalize to heterophilic graphs and …

KAGNN: Graph neural network with kernel alignment for heterogeneous graph learning

M Han, H Zhang - Knowledge-Based Systems, 2024 - Elsevier
Current studies have proposed the incorporation of kernel methods with graph
representation learning, and graph kernels have attracted widespread attention for …

How do large language models understand genes and cells

C Fang, Y Wang, Y Song, Q Long, W Lu… - ACM Transactions on …, 2024 - dl.acm.org
Researching genes and their interactions is crucial for deciphering the fundamental laws of
cellular activity, advancing disease treatment, drug discovery, and more. Large language …