Sociotechnical safeguards for genomic data privacy

Z Wan, JW Hazel, EW Clayton, Y Vorobeychik… - Nature Reviews …, 2022 - nature.com
Recent developments in a variety of sectors, including health care, research and the direct-
to-consumer industry, have led to a dramatic increase in the amount of genomic data that …

[HTML][HTML] Standards and guidelines for validating next-generation sequencing bioinformatics pipelines: a joint recommendation of the Association for Molecular …

S Roy, C Coldren, A Karunamurthy, NS Kip… - The Journal of Molecular …, 2018 - Elsevier
Bioinformatics pipelines are an integral component of next-generation sequencing (NGS).
Processing raw sequence data to detect genomic alterations has significant impact on …

Functional genomics data: privacy risk assessment and technological mitigation

G Gürsoy, T Li, S Liu, E Ni, CM Brannon… - Nature Reviews …, 2022 - nature.com
The generation of functional genomics data by next-generation sequencing has increased
greatly in the past decade. Broad sharing of these data is essential for research …

Privacy-preserving techniques of genomic data—a survey

MMA Aziz, MN Sadat, D Alhadidi, S Wang… - Briefings in …, 2019 - academic.oup.com
Genomic data hold salient information about the characteristics of a living organism.
Throughout the past decade, pinnacle developments have given us more accurate and …

Systematizing genome privacy research: a privacy-enhancing technologies perspective

A Mittos, B Malin, E De Cristofaro - arxiv preprint arxiv:1712.02193, 2017 - arxiv.org
Rapid advances in human genomics are enabling researchers to gain a better
understanding of the role of the genome in our health and well-being, stimulating hope for …

Methods of privacy-preserving genomic sequencing data alignments

D Lu, Y Zhang, L Zhang, H Wang… - Briefings in …, 2021 - academic.oup.com
Genomic data alignment, a fundamental operation in sequencing, can be utilized to map
reads into a reference sequence, query on a genomic database and perform genetic tests …

High-speed and high-ratio referential genome compression

Y Liu, H Peng, L Wong, J Li - Bioinformatics, 2017 - academic.oup.com
Motivation The rapidly increasing number of genomes generated by high-throughput
sequencing platforms and assembly algorithms is accompanied by problems in data …

Digital dna lifecycle security and privacy: an overview

MM Alsaffar, M Hasan, GP McStay… - Briefings in …, 2022 - academic.oup.com
DNA sequencing technologies have advanced significantly in the last few years leading to
advancements in biomedical research which has improved personalised medicine and the …

A survey on genomic data by privacy-preserving techniques perspective

B Abinaya, S Santhi - Computational Biology and Chemistry, 2021 - Elsevier
Nowadays, the purpose of human genomics is widely emerging in health-related problems
and also to achieve time and cost-efficient healthcare. Due to advancement in genomics and …

Crypt4GH: a file format standard enabling native access to encrypted data

A Senf, R Davies, F Haziza, J Marshall… - …, 2021 - academic.oup.com
Motivation The majority of genome analysis tools and pipelines require data to be decrypted
for access. This potentially leaves sensitive genetic data exposed, either because the …