Jaguar: A high‐performance quantum chemistry software program with strengths in life and materials sciences

AD Bochevarov, E Harder, TF Hughes… - … Journal of Quantum …, 2013 - Wiley Online Library
Jaguar is an ab initio quantum chemical program that specializes in fast electronic structure
predictions for molecular systems of medium and large size. Jaguar focuses on …

The impact of molecular dynamics on drug design: applications for the characterization of ligand–macromolecule complexes

J Mortier, C Rakers, M Bermudez, MS Murgueitio… - Drug discovery today, 2015 - Elsevier
Highlights•Which molecular dynamics (MD) techniques are available for drug design?•How
is MD used to investigate ligand–macromolecule complexes?•How are MD studies applied …

Assessment of the “6-31+ G**+ LANL2DZ” mixed basis set coupled with density functional theory methods and the effective core potential: prediction of heats of …

Y Yang, MN Weaver, KM Merz Jr - The Journal of Physical …, 2009 - ACS Publications
Computational chemists have long demonstrated great interest in finding ways to reliably
and accurately predict the molecular properties for transition-metal-containing complexes …

Simulation of complex biomolecular systems: the ribosome challenge

LV Bock, S Gabrielli, MH Kolář… - Annual Review of …, 2023 - annualreviews.org
Large biomolecular systems are at the heart of many essential cellular processes. The
dynamics and energetics of an increasing number of these systems are being studied by …

Role of the catalytic triad and oxyanion hole in acetylcholinesterase catalysis: an ab initio QM/MM study

Y Zhang, J Kua, JA McCammon - Journal of the American …, 2002 - ACS Publications
The initial step of the acylation reaction catalyzed by acetylcholinesterase (AChE) has been
studied by a combined ab initio quantum mechanical/molecular mechanical (QM/MM) …

The role of quantum mechanics in structure-based drug design

K Raha, MB Peters, B Wang, N Yu, AM Wollacott… - Drug discovery today, 2007 - Elsevier
Herein we will focus on the use of quantum mechanics (QM) in drug design (DD) to solve
disparate problems from scoring protein–ligand poses to building QM QSAR models …

[KİTAP][B] Computational medicinal chemistry for drug discovery

P Bultinck, H De Winter, W Langenaeker, JP Tollenare - 2003 - taylorfrancis.com
Observing computational chemistry's proven value to the introduction of new medicines,
Computational Medicinal Chemistry for Drug Discovery offers the techniques most frequently …

Actinide speciation in relation to biological processes

E Ansoborlo, O Prat, P Moisy, C Den Auwer… - Biochimie, 2006 - Elsevier
In case of accidental release of radionuclides into the environment, actinides represent a
severe health risk to human beings following internal contamination (inhalation, ingestion or …

Accounting for polarization in molecular simulation

H Yu, WF van Gunsteren - Computer Physics Communications, 2005 - Elsevier
Polarization plays an important role in the energetics of molecular systems, not the least in
biomolecular systems. Most computer simulation studies of such systems do not treat …

Large-scale validation of a quantum mechanics based scoring function: predicting the binding affinity and the binding mode of a diverse set of protein− ligand …

K Raha, KM Merz - Journal of medicinal chemistry, 2005 - ACS Publications
Computational methods to calculate binding affinity in protein− ligand interaction are of
immense interest because of obvious practical applications in structure-based drug design …