Machine learning and deep learning applications in microbiome research

R Hernández Medina, S Kutuzova… - ISME …, 2022 - academic.oup.com
The many microbial communities around us form interactive and dynamic ecosystems called
microbiomes. Though concealed from the naked eye, microbiomes govern and influence …

The evolution, assembly, and dynamics of marine Holobionts

RA González-Pech, VY Li, V Garcia… - Annual Review of …, 2024 - annualreviews.org
The holobiont concept (ie, multiple living beings in close symbiosis with one another and
functioning as a unit) is revolutionizing our understanding of biology, especially in marine …

Host-microbiota interactions: from holobiont theory to analysis

JC Simon, JR Marchesi, C Mougel, MA Selosse - Microbiome, 2019 - Springer
In the recent years, the holobiont concept has emerged as a theoretical and experimental
framework to study the interactions between hosts and their associated microbial …

A genomic view of the microbiome of coral reef demosponges

SJ Robbins, W Song, JP Engelberts, B Glasl… - The ISME …, 2021 - academic.oup.com
Sponges underpin the productivity of coral reefs, yet few of their microbial symbionts have
been functionally characterised. Here we present an analysis of~ 1200 metagenome …

Characterization of a sponge microbiome using an integrative genome-centric approach

JP Engelberts, SJ Robbins, JM de Goeij… - The ISME …, 2020 - academic.oup.com
Marine sponges often host diverse and species-specific communities of microorganisms that
are critical for host health. Previous functional genomic investigations of the sponge …

Ice‐Ice disease: an environmentally and microbiologically driven syndrome in tropical seaweed aquaculture

GM Ward, CSB Kambey, JP Faisan Jr… - Reviews in …, 2022 - Wiley Online Library
Seaweeds account for nearly 30% of global aquaculture production by volume, and their
cultivation provides important opportunities for employment and wealth generation …

Microbiome diversity and host immune functions influence survivorship of sponge holobionts under future ocean conditions

N Posadas, JIP Baquiran, MAL Nada, M Kelly… - The ISME …, 2022 - academic.oup.com
The sponge-associated microbial community contributes to the overall health and adaptive
capacity of the sponge holobiont. This community is regulated by the environment and the …

[LIBRO][B] Marine microbiology: ecology & applications

CB Munn - 2019 - taylorfrancis.com
The third edition of this bestselling text has been rigorously updated to reflect major new
discoveries and concepts since 2011, especially progress due to extensive application of …

Structure and function of the Arctic and Antarctic marine microbiota as revealed by metagenomics

S Cao, W Zhang, W Ding, M Wang, S Fan, B Yang… - Microbiome, 2020 - Springer
Abstract Background The Arctic and Antarctic are the two most geographically distant
bioregions on earth. Recent sampling efforts and following metagenomics have shed light …

Sponges to be winners under near-future climate scenarios

JJ Bell, HM Bennett, A Rovellini, NS Webster - Bioscience, 2018 - academic.oup.com
Sponges are functionally important components of global benthic environments and have
been proposed as potential winners under future climate scenarios. We review the evidence …