Autophagy in infection, inflammation and immunity

V Deretic, T Saitoh, S Akira - Nature Reviews Immunology, 2013 - nature.com
Autophagy is a fundamental eukaryotic pathway that has multiple effects on immunity.
Autophagy is induced by pattern recognition receptors and, through autophagic adaptors, it …

Genetics of type 2 diabetes—pitfalls and possibilities

RB Prasad, L Groop - Genes, 2015 - mdpi.com
Type 2 diabetes (T2D) is a complex disease that is caused by a complex interplay between
genetic, epigenetic and environmental factors. While the major environmental factors, diet …

Pangenome-based genome inference allows efficient and accurate genoty** across a wide spectrum of variant classes

J Ebler, P Ebert, WE Clarke, T Rausch, PA Audano… - Nature …, 2022 - nature.com
Typical genoty** workflows map reads to a reference genome before identifying genetic
variants. Generating such alignments introduces reference biases and comes with …

An integrated map of structural variation in 2,504 human genomes

PH Sudmant, T Rausch, EJ Gardner, RE Handsaker… - Nature, 2015 - nature.com
Structural variants are implicated in numerous diseases and make up the majority of varying
nucleotides among human genomes. Here we describe an integrated set of eight structural …

Map** and characterization of structural variation in 17,795 human genomes

HJ Abel, DE Larson, AA Regier, C Chiang, I Das… - Nature, 2020 - nature.com
A key goal of whole-genome sequencing for studies of human genetics is to interrogate all
forms of variation, including single-nucleotide variants, small insertion or deletion (indel) …

The impact of structural variation on human gene expression

C Chiang, AJ Scott, JR Davis, EK Tsang, X Li, Y Kim… - Nature …, 2017 - nature.com
Structural variants (SVs) are an important source of human genetic diversity, but their
contribution to traits, disease and gene regulation remains unclear. We mapped cis …

Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations

BJ O'Roak, L Vives, S Girirajan, E Karakoc, N Krumm… - Nature, 2012 - nature.com
It is well established that autism spectrum disorders (ASD) have a strong genetic
component; however, for at least 70% of cases, the underlying genetic cause is unknown …

Causal relationship between obesity and vitamin D status: bi-directional Mendelian randomization analysis of multiple cohorts

KS Vimaleswaran, DJ Berry, C Lu, E Tikkanen… - PLoS …, 2013 - journals.plos.org
Background Obesity is associated with vitamin D deficiency, and both are areas of active
public health concern. We explored the causality and direction of the relationship between …

A higher mutational burden in females supports a “female protective model” in neurodevelopmental disorders

S Jacquemont, BP Coe, M Hersch, MH Duyzend… - The American Journal of …, 2014 - cell.com
Increased male prevalence has been repeatedly reported in several neurodevelopmental
disorders (NDs), leading to the concept of a" female protective model." We investigated the …

[HTML][HTML] A map of human genome variation from population scale sequencing

1000 Genomes Project Consortium - Nature, 2010 - ncbi.nlm.nih.gov
Abstract The 1000 Genomes Project aims to provide a deep characterisation of human
genome sequence variation as a foundation for investigating the relationship between …