CHARMM: the biomolecular simulation program

BR Brooks, CL Brooks III… - Journal of …, 2009 - Wiley Online Library
Abstract CHARMM (Chemistry at HARvard Molecular Mechanics) is a highly versatile and
widely used molecular simulation program. It has been developed over the last three …

Vibrational spectroscopic map, vibrational spectroscopy, and intermolecular interaction

CR Baiz, B Błasiak, J Bredenbeck, M Cho… - Chemical …, 2020 - ACS Publications
Vibrational spectroscopy is an essential tool in chemical analyses, biological assays, and
studies of functional materials. Over the past decade, various coherent nonlinear vibrational …

Dielectric continuum methods for quantum chemistry

JM Herbert - Wiley Interdisciplinary Reviews: Computational …, 2021 - Wiley Online Library
This review describes the theory and implementation of implicit solvation models based on
continuum electrostatics. Within quantum chemistry this formalism is sometimes …

Vibrational spectroscopy as a probe of structure and dynamics in liquid water

HJ Bakker, JL Skinner - Chemical reviews, 2010 - ACS Publications
Water is, of course, a fascinating and important substance. For such a simple molecule, its
condensed phase properties are surprisingly complex. Here we might mention the many …

Vibrational spectroscopy and dynamics of water

F Perakis, L De Marco, A Shalit, F Tang… - Chemical …, 2016 - ACS Publications
We present an overview of recent static and time-resolved vibrational spectroscopic studies
of liquid water from ambient conditions to the supercooled state, as well as of crystalline and …

Hydrogen bonding definitions and dynamics in liquid water

R Kumar, JR Schmidt, JL Skinner - The Journal of chemical physics, 2007 - pubs.aip.org
X-ray and neutron diffractions, vibrational spectroscopy, and x-ray Raman scattering and
absorption experiments on water are often interpreted in terms of hydrogen bonding. To this …

IR and Raman spectra of liquid water: Theory and interpretation

BM Auer, JL Skinner - The Journal of chemical physics, 2008 - pubs.aip.org
IR and Raman (parallel-and perpendicular-polarized) spectra in the OH stretch region for
liquid water were measured some years ago, but their interpretation is still controversial. In …

Molecular structure and modeling of water–air and ice–air interfaces monitored by sum-frequency generation

F Tang, T Ohto, S Sun, JR Rouxel, S Imoto… - Chemical …, 2020 - ACS Publications
From a glass of water to glaciers in Antarctica, water–air and ice–air interfaces are abundant
on Earth. Molecular-level structure and dynamics at these interfaces are key for …

Hydrogen bonding at the water surface revealed by isotopic dilution spectroscopy

IV Stiopkin, C Weeraman, PA Pieniazek, FY Shalhout… - Nature, 2011 - nature.com
The air–water interface is perhaps the most common liquid interface. It covers more than 70
per cent of the Earth's surface and strongly affects atmospheric, aerosol and environmental …

Frequency-frequency correlation functions and apodization in two-dimensional infrared vibrational echo spectroscopy: A new approach

K Kwak, S Park, IJ Finkelstein, MD Fayer - The Journal of chemical …, 2007 - pubs.aip.org
Ultrafast two-dimensional infrared (2D-IR) vibrational echo spectroscopy can probe
structural dynamics under thermal equilibrium conditions on time scales ranging from …