ERIC recommendations for TP53 mutation analysis in chronic lymphocytic leukemia—update on methodological approaches and results interpretation

J Malcikova, E Tausch, D Rossi, LA Sutton, T Soussi… - Leukemia, 2018 - nature.com
In chronic lymphocytic leukemia (CLL), TP53 gene defects, due to deletion of the 17p13
locus and/or mutation (s) within the TP53 gene, are associated with resistance to …

Targeting p53 in chronic lymphocytic leukemia

R Moia, P Boggione, AM Mahmoud… - Expert Opinion on …, 2020 - Taylor & Francis
Introduction Genomic studies have allowed to identify molecular predictors for chronic
lymphocytic leukemia (CLL) treatment tailoring. TP53 disruption is the strongest predictor of …

ERIC recommendations for TP53 mutation analysis in chronic lymphocytic leukemia—2024 update

J Malcikova, S Pavlova, P Baliakas… - Leukemia, 2024 - nature.com
In chronic lymphocytic leukemia (CLL), analysis of TP53 aberrations (deletion and/or
mutation) is a crucial part of treatment decision-making algorithms. Technological and …

Selective non-Watson-Crick pairing-guided DNA synthesis for locus-specific analysis of 8-oxo-7, 8-dihydroguanine in telomeres at ultrahigh resolution

S Wang, H Liu, Q Xu, L Wang, C Zhang - Sensors and Actuators B …, 2024 - Elsevier
Oxo-7, 8-dihydroguanine (OG) is the most common oxidative modification in chromosomal
DNA induced by reactive oxygen species (ROS). OG damage promotes telomere shortening …

Increased abundance of Firmicutes and depletion of Bacteroidota predicts poor outcome in chronic lymphocytic leukemia

M Paziewska, M Szelest, M Kiełbus… - Oncology …, 2024 - spandidos-publications.com
Evidence indicates that there are significant alterations in gut microbiota diversity and
composition in patients with hematological malignancies. The present study investigated the …

Assessment of the IGHV mutational status at diagnosis can help to decide the follow-up time for patients with early stage CLL before time to first treatment (TTFT)

P Galieni, E Troiani, P Picardi, M Angelini… - Leukemia Research, 2024 - Elsevier
The mutational status of the IGHV gene is routinely assessed in patients with chronic
lymphocytic leukaemia (CLL), since it is both prognostic of clinical outcome and predictive of …

PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly

RRM Oliveira, GL Nunes, TGL de Lima, G Oliveira… - BMC …, 2018 - Springer
Background Taxonomic identification of plants and insects is a hard process that demands
expert taxonomists and time, and it's often difficult to distinguish on morphology only. DNA …

SangeR: the high-throughput sanger sequencing analysis pipeline

K Schmid, H Dohmen, N Ritschel… - Bioinformatics …, 2022 - academic.oup.com
In the era of next generation sequencing and beyond, the Sanger technique is still widely
used for variant verification of inconclusive or ambiguous high-throughput sequencing …

sangerFlow, a Sanger sequencing-based bioinformatics pipeline for pests and pathogens identification

MA Prodhan, M Power, M Kehoe - bioRxiv, 2024 - biorxiv.org
Sequencing of a Polymerase Chain Reaction product (amplicon) is called amplicon
sequencing. Amplicon sequencing allows for reliable identification of an organism by …

[PDF][PDF] GENOMIC DATA ANALYSIS Ph. D. Thesis in the field of oncology

MVDB Tichy, MK Pal - is.muni.cz
DNA sequencing as primary means for analyzing genomic data is a continually advancing
set of methods. The more recent methods of DNA sequencing producing large quantities of …