The hidden world within plants: ecological and evolutionary considerations for defining functioning of microbial endophytes

PR Hardoim, LS Van Overbeek, G Berg… - Microbiology and …, 2015 - journals.asm.org
All plants are inhabited internally by diverse microbial communities comprising bacterial,
archaeal, fungal, and protistic taxa. These microorganisms showing endophytic lifestyles …

The divided bacterial genome: structure, function, and evolution

GC Dicenzo, TM Finan - Microbiology and Molecular Biology …, 2017 - journals.asm.org
Approximately 10% of bacterial genomes are split between two or more large DNA
fragments, a genome architecture referred to as a multipartite genome. This multipartite …

Variation in rhizosphere microbial communities and its association with the symbiotic efficiency of rhizobia in soybean

Q Han, Q Ma, Y Chen, B Tian, L Xu, Y Bai… - The ISME …, 2020 - academic.oup.com
Rhizobia–legume symbiosis is an important type of plant–microbe mutualism; however, the
establishment of this association is complicated and can be affected by many factors. The …

A reference-grade wild soybean genome

M **e, CYL Chung, MW Li, FL Wong, X Wang… - Nature …, 2019 - nature.com
Efficient crop improvement depends on the application of accurate genetic information
contained in diverse germplasm resources. Here we report a reference-grade genome of …

Minimal standards for the description of new genera and species of rhizobia and agrobacteria

PM De Lajudie, M Andrews, J Ardley… - … of Systematic and …, 2019 - microbiologyresearch.org
Herein the members of the Subcommittee on Taxonomy of Rhizobia and Agrobacteria of the
International Committee on Systematics of Prokaryotes review recent developments in …

Chemical signaling involved in plant–microbe interactions

FO Chagas, R de Cassia Pessotti… - Chemical Society …, 2018 - pubs.rsc.org
Microorganisms are found everywhere, and they are closely associated with plants.
Because the establishment of any plant–microbe association involves chemical …

Symbiosis within symbiosis: evolving nitrogen-fixing legume symbionts

P Remigi, J Zhu, JPW Young, C Masson-Boivin - Trends in microbiology, 2016 - cell.com
Bacterial accessory genes are genomic symbionts with an evolutionary history and future
that is different from that of their hosts. Packages of accessory genes move from strain to …

PLAZA 3.0: an access point for plant comparative genomics

S Proost, M Van Bel, D Vaneechoutte… - Nucleic acids …, 2015 - academic.oup.com
Comparative sequence analysis has significantly altered our view on the complexity of
genome organization and gene functions in different kingdoms. PLAZA 3.0 is designed to …

Polyphasic evidence supporting the reclassification of Bradyrhizobium japonicum group Ia strains as Bradyrhizobium diazoefficiens sp. nov.

JRM Delamuta, RA Ribeiro… - … of systematic and …, 2013 - microbiologyresearch.org
Bradyrhizobium japonicum was described from soybean root-nodule bacterial isolates.
Since its description, several studies have revealed heterogeneities among rhizobia …

Soybean-nodulating rhizobia: ecology, characterization, diversity, and growth promoting functions

MD Nakei, PB Venkataramana… - Frontiers in Sustainable …, 2022 - frontiersin.org
The worldwide increase in population continues to threaten the sustainability of agricultural
systems since agricultural output must be optimized to meet the global rise in food demand …