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Protein Data Bank (PDB): the single global macromolecular structure archive
Abstract The Protein Data Bank (PDB)––the single global repository of experimentally
determined 3D structures of biological macromolecules and their complexes––was …
determined 3D structures of biological macromolecules and their complexes––was …
The RCSB protein data bank: integrative view of protein, gene and 3D structural information
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB, http://rcsb. org), the US data center for the global PDB archive, makes PDB data freely …
PDB, http://rcsb. org), the US data center for the global PDB archive, makes PDB data freely …
Synchrotron big data science
C Wang, U Steiner, A Sepe - Small, 2018 - Wiley Online Library
The rapid development of synchrotrons has massively increased the speed at which
experiments can be performed, while new techniques have increased the amount of raw …
experiments can be performed, while new techniques have increased the amount of raw …
Validation of structures in the Protein Data Bank
S Gore, ES García, PMS Hendrickx, A Gutmanas… - Structure, 2017 - cell.com
The Worldwide PDB recently launched a deposition, biocuration, and validation tool:
OneDep. At various stages of OneDep data processing, validation reports for three …
OneDep. At various stages of OneDep data processing, validation reports for three …
Neurodegenerative disease mutations in TREM2 reveal a functional surface and distinct loss-of-function mechanisms
Genetic variations in the myeloid immune receptor TREM2 are linked to several
neurodegenerative diseases. To determine how TREM2 variants contribute to these …
neurodegenerative diseases. To determine how TREM2 variants contribute to these …
Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED
Traditionally, crystallographic analysis of macromolecules has depended on large, well-
ordered crystals, which often require significant effort to obtain. Even sizable crystals …
ordered crystals, which often require significant effort to obtain. Even sizable crystals …
Structural basis of coronavirus E protein interactions with human PALS1 PDZ domain
SARS-CoV-2 infection leads to coronavirus disease 2019 (COVID-19), which is associated
with severe and life-threatening pneumonia and respiratory failure. However, the molecular …
with severe and life-threatening pneumonia and respiratory failure. However, the molecular …
Towards the accurate modelling of antibody− antigen complexes from sequence using machine learning and information-driven docking
Motivation Antibody− antigen complex modelling is an important step in computational
workflows for therapeutic antibody design. While experimentally determined structures of …
workflows for therapeutic antibody design. While experimentally determined structures of …
Modeling antibody-antigen complexes by information-driven docking
Antibodies are Y-shaped proteins essential for immune response. Their capability to
recognize antigens with high specificity makes them excellent therapeutic targets …
recognize antigens with high specificity makes them excellent therapeutic targets …
Ancient and conserved functional interplay between Bcl-2 family proteins in the mitochondrial pathway of apoptosis
In metazoans, Bcl-2 family proteins are major regulators of mitochondrially mediated
apoptosis; however, their evolution remains poorly understood. Here, we describe the …
apoptosis; however, their evolution remains poorly understood. Here, we describe the …