An end-to-end deep learning method for protein side-chain packing and inverse folding

M McPartlon, J Xu - Proceedings of the National Academy of Sciences, 2023 - pnas.org
Protein side-chain packing (PSCP), the task of determining amino acid side-chain
conformations given only backbone atom positions, has important applications to protein …

Understanding and controlling food protein structure and function in foods: perspectives from experiments and computer simulations

FL Barroso da Silva, P Carloni… - Annual review of …, 2020 - annualreviews.org
The structure and interactions of proteins play a critical role in determining the quality
attributes of many foods, beverages, and pharmaceutical products. Incorporating a …

Nanoparticle transport phenomena in confined flows

R Radhakrishnan, S Farokhirad, DM Eckmann… - Advances in heat …, 2019 - Elsevier
Nanoparticles submerged in confined flow fields occur in several technological applications
involving heat and mass transfer in nanoscale systems. Describing the transport with …

[HTML][HTML] Role of force fields in protein function prediction

Z Hazarika, S Rajkhowa, AN Jha - Homology molecular modeling …, 2020 - intechopen.com
The world today, although, has developed an elaborate health system to fortify against
known and unknown diseases, it continues to be challenged by new as well as emerging …

An end-to-end deep learning method for rotamer-free protein side-chain packing

M McPartlon, J Xu - bioRxiv, 2022 - biorxiv.org
Protein side-chain packing (PSCP), the task of determining amino acid side-chain
conformations, has important applications to protein structure prediction, refinement, and …

Fragment-Based Protein Structure Prediction, Where Are We Now?

Q Noor, R Kayode, R Riaz, A Siddiqui… - Journal of …, 2024 - World Scientific
In the past decade, there has been an extensive advancement in the creation of methods for
the design and prediction of protein structures. Expeditious growth in protein structure and …

[PDF][PDF] Correlation analysis of European Sea Bass (Dicentrarchus labrax) Growth Hormone (GH) Gene and Growth Traits

EÖ Gökçek, R Işık, B Karahan, K Gamsız - 2022 - academia.edu
The growth hormone (GH) gene has important regulatory roles in postnatal somatic growth,
metabolism and development of vertebrates and sh. The aim of this study was to identify the …

Normal Mode Analysis: A Tool for Better Understanding Protein

JA Bauer, V Bauerová-Hlinková - Homology Molecular Modeling …, 2021 - books.google.com
Molecular dynamics (MD) and normal mode analysis (NMA) are very useful methods for
characterizing various dynamic aspects of biological macromolecules. In comparison to MD …

[PDF][PDF] Understanding and Controlling Food Protein Folding and Aggregation and taste: perspectives from experiment and simulation

FLB da Silva, P Carloni, D Cheung, G Cottone… - researchrepository.ucd.ie
Molecular mechanisms play key roles at a fundamental and processing level, in innovative
taste systems, functional and nutritional ingredients, and integrated solutions for the food …