[HTML][HTML] A practical guide to small angle X-ray scattering (SAXS) of flexible and intrinsically disordered proteins

AG Kikhney, DI Svergun - FEBS letters, 2015 - Elsevier
Small-angle X-ray scattering (SAXS) is a biophysical method to study the overall shape and
structural transitions of biological macromolecules in solution. SAXS provides low resolution …

Polyproline-II helix in proteins: structure and function

AA Adzhubei, MJE Sternberg, AA Makarov - Journal of molecular biology, 2013 - Elsevier
The poly-l-proline type II (PPII) helix in recent years has emerged clearly as a structural class
not only of fibrillar proteins (in collagen, PPII is a dominant conformation) but also of the …

Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering

G Tria, HDT Mertens, M Kachala, DI Svergun - IUCrJ, 2015 - journals.iucr.org
Dynamic ensembles of macromolecules mediate essential processes in biology.
Understanding the mechanisms driving the function and molecular interactions …

Single-molecule FRET spectroscopy and the polymer physics of unfolded and intrinsically disordered proteins

B Schuler, A Soranno, H Hofmann… - Annual Review of …, 2016 - annualreviews.org
The properties of unfolded proteins have long been of interest because of their importance
to the protein folding process. Recently, the surprising prevalence of unstructured regions or …

DeerLab: A comprehensive toolbox for analyzing dipolar EPR spectroscopy data

L Fábregas Ibáñez, G Jeschke… - Magnetic Resonance …, 2020 - mr.copernicus.org
Dipolar EPR spectroscopy (DEER and other techniques) enables the structural
characterization of macromolecular and biological systems by measurement of distance …

A review of methods available to estimate solvent-accessible surface areas of soluble proteins in the folded and unfolded states

S Ausaf Ali, M Imtaiyaz Hassan, A Islam… - Current Protein and …, 2014 - benthamdirect.com
Solvent accessible surface area (SASA) of proteins has always been considered as a
decisive factor in protein folding and stability studies. It is defined as the surface …

Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy

H Hofmann, A Soranno, A Borgia, K Gast… - Proceedings of the …, 2012 - pnas.org
The dimensions of unfolded and intrinsically disordered proteins are highly dependent on
their amino acid composition and solution conditions, especially salt and denaturant …

Intrinsically disordered regions that drive phase separation form a robustly distinct protein class

AI Ibrahim, N Khaodeuanepheng, D Amarasekara… - Biophysical …, 2023 - cell.com
Liquid-liquid phase separation (LLPS) of proteins is thought to be a primary driving force for
the formation of membraneless organelles, which control a wide range of biological …

Random-coil behavior and the dimensions of chemically unfolded proteins

JE Kohn, IS Millett, J Jacob, B Zagrovic… - Proceedings of the …, 2004 - pnas.org
Spectroscopic studies have identified a number of proteins that appear to retain significant
residual structure under even strongly denaturing conditions. Intrinsic viscosity …

Global hairpin folding of tau in solution

S Jeganathan, M von Bergen, H Brutlach… - Biochemistry, 2006 - ACS Publications
The microtubule-associated protein tau stabilizes microtubules in its physiological role,
whereas it forms insoluble aggregates (paired helical filaments) in Alzheimer's disease …