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Glycans in drug discovery
P Valverde, A Ardá, NC Reichardt… - …, 2019 - pubs.rsc.org
Glycans are key players in many biological processes. They are essential for protein folding
and stability and act as recognition elements in cell–cell and cell–matrix interactions. Thus …
and stability and act as recognition elements in cell–cell and cell–matrix interactions. Thus …
The recognition of glycans by protein receptors. Insights from NMR spectroscopy
A Ardá, J Jiménez-Barbero - Chemical Communications, 2018 - pubs.rsc.org
Carbohydrates (glycans, saccharides, sugars) are everywhere. In fact, glycan–protein
interactions are involved in many essential processes of life and disease. The …
interactions are involved in many essential processes of life and disease. The …
Partially open HIV-1 envelope structures exhibit conformational changes relevant for coreceptor binding and fusion
HIV-1 Env, a trimer of gp120-gp41 heterodimers, mediates membrane fusion after binding
host receptor CD4. Receptor binding displaces V1V2 loops from Env's apex, allowing …
host receptor CD4. Receptor binding displaces V1V2 loops from Env's apex, allowing …
Automatically fixing errors in glycoprotein structures with Rosetta
Recent advances in single-particle cryo-electron microscopy (cryoEM) have resulted in
determination of an increasing number of protein structures with resolved glycans. However …
determination of an increasing number of protein structures with resolved glycans. However …
Structural characterization of a highly-potent V3-glycan broadly neutralizing antibody bound to natively-glycosylated HIV-1 envelope
Broadly neutralizing antibodies (bNAbs) isolated from HIV-1-infected individuals inform HIV-
1 vaccine design efforts. Develo** bNAbs with increased efficacy requires understanding …
1 vaccine design efforts. Develo** bNAbs with increased efficacy requires understanding …
Structural analysis of the glycoprotein complex avidin by tandem-trapped ion mobility spectrometry–mass spectrometry (tandem-TIMS/MS)
Glycoproteins play a central role in many biological processes including disease
mechanisms. Nevertheless, because glycoproteins are heterogeneous entities, it remains …
mechanisms. Nevertheless, because glycoproteins are heterogeneous entities, it remains …
Unprecedented Role of Hybrid N-Glycans as Ligands for HIV-1 Broadly Neutralizing Antibodies
The development of an HIV vaccine has been hampered by the extraordinary mutability and
genetic diversity of the virus, particularly the substantial sequence diversity of gp120 and gp …
genetic diversity of the virus, particularly the substantial sequence diversity of gp120 and gp …
Online carbohydrate 3D structure validation with the Privateer web app
Owing to the difficulties associated with working with carbohydrates, validating glycan 3D
structures prior to deposition into the Protein Data Bank has become a staple of the structure …
structures prior to deposition into the Protein Data Bank has become a staple of the structure …
Subtle longitudinal alterations in Env sequence potentiate differences in sensitivity to broadly neutralizing antibodies following acute HIV-1 subtype C infection
T Mandizvo, N Gumede, B Ndlovu, S Ndlovu… - Journal of …, 2022 - journals.asm.org
Broadly neutralizing antibodies (bNAbs) for HIV-1 prevention or cure strategies must inhibit
transmitted/founder and reservoir viruses. Establishing sensitivity of circulating viruses to …
transmitted/founder and reservoir viruses. Establishing sensitivity of circulating viruses to …
Leveraging glycomics data in glycoprotein 3D structure validation with Privateer
The heterogeneity, mobility and complexity of glycans in glycoproteins have been, and
currently remain, significant challenges in structural biology. These aspects present unique …
currently remain, significant challenges in structural biology. These aspects present unique …