Application of machine learning in bacteriophage research

Y Nami, N Imeni, B Panahi - BMC microbiology, 2021 - Springer
Phages are one of the key components in the structure, dynamics, and interactions of
microbial communities in different bins. It has a clear impact on human health and the food …

Exploring halobiome resources for develo** salt-tolerant crops: A perspective review

T Khare, M Jamla, V Mathur, V Kumar - Journal of Plant Growth Regulation, 2024 - Springer
Hyper soil salinity is currently one of the major concerns for global agricultural yield as it
directly hinders the qualitative and quantitative aspects of agronomic outcomes. Owing to …

Identification of potentially functional modules and diagnostic genes related to amyotrophic lateral sclerosis based on the WGCNA and LASSO algorithms

N Daneshafrooz, M Bagherzadeh Cham, M Majidi… - Scientific reports, 2022 - nature.com
Amyotrophic lateral sclerosis (ALS) is a genetically and phenotypically heterogeneous
disease results in the loss of motor neurons. Mounting information points to involvement of …

Integrative systems biology analysis elucidates mastitis disease underlying functional modules in dairy cattle

N Ghahramani, J Shodja, SA Rafat, B Panahi… - Frontiers in …, 2021 - frontiersin.org
Background: Mastitis is the most prevalent disease in dairy cattle and one of the most
significant bovine pathologies affecting milk production, animal health, and reproduction. In …

Meta-analysis of transcriptomic profiles in Dunaliella tertiolecta reveals molecular pathway responses to different abiotic stresses

B Panahi, M Farhadian, NH Gharajeh… - Functional Plant …, 2024 - CSIRO Publishing
Microalgae are photosynthetic organisms and a potential source of sustainable metabolite
production. However, different stress conditions might affect the production of various …

[HTML][HTML] Effects of flaxseed powder in improving non-alcoholic fatty liver by regulating gut microbiota-bile acids metabolic pathway through FXR/TGR5 mediating

C Yang, L Yang, Y Yang, M Wan, D Xu, D Pan… - Biomedicine & …, 2023 - Elsevier
Non-alcoholic fatty liver disease (NAFLD) is gradually becoming one of the most common
and health-endangering diseases. Flaxseed powder (FLA) is rich in α-linolenic acid, dietary …

Integrative multiomics in the lung reveals a protective role of Asporin in pulmonary arterial hypertension

J Hong, L Medzikovic, W Sun, B Wong, G Ruffenach… - Circulation, 2024 - ahajournals.org
BACKGROUND: Integrative multiomics can elucidate pulmonary arterial hypertension (PAH)
pathobiology, but procuring human PAH lung samples is rare. METHODS: We leveraged …

[HTML][HTML] Trancriptome data mining in combination with co-expression network analysis identifies the functional modules and critical regulators in Hordeum vulgare L …

B Panahi, A Shahi - Biochemistry and Biophysics Reports, 2024 - Elsevier
Cold stress, as an abiotic stress, is one of the most limiting factors which pose a great threat
to the plant's productivity. To understand the transcriptional regulation and connectivity …

Global transcriptome and coexpression network analyses reveal new insights into somatic embryogenesis in hybrid sweetgum (Liquidambar styraciflua× Liquidambar …

S Qi, R Zhao, J Yan, Y Fan, C Huang, H Li… - Frontiers in Plant …, 2021 - frontiersin.org
Somatic embryogenesis (SE) is a process of somatic cells that dedifferentiate to totipotent
embryonic stem cells and generate embryos in vitro. Despite recent scientific headway in …