Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …

Gene-by-environment interactions in plants: Molecular mechanisms, environmental drivers, and adaptive plasticity

JD Napier, RW Heckman, TE Juenger - The Plant Cell, 2023 - academic.oup.com
Plants demonstrate a broad range of responses to environmental shifts. One of the most
remarkable responses is plasticity, which is the ability of a single plant genotype to produce …

Environmental control of rice flowering time

G Vicentini, M Biancucci, L Mineri, D Chirivì… - Plant …, 2023 - cell.com
Correct measurement of environmental parameters is fundamental for plant fitness and
survival, as well as for timing developmental transitions, including the switch from vegetative …

Machine learning for predicting phenotype from genotype and environment

T Guo, X Li - Current Opinion in Biotechnology, 2023 - Elsevier
Predicting phenotype with genomic and environmental information is critically needed and
challenging. Machine learning methods have emerged as powerful tools to make accurate …

[HTML][HTML] An integrated framework reinstating the environmental dimension for GWAS and genomic selection in crops

X Li, T Guo, J Wang, WA Bekele, S Sukumaran… - Molecular plant, 2021 - cell.com
Identifying mechanisms and pathways involved in gene–environment interplay and
phenotypic plasticity is a long-standing challenge. It is highly desirable to establish an …

Phenotypic plasticity in plant height shaped by interaction between genetic loci and diurnal temperature range

Q Mu, T Guo, X Li, J Yu - New Phytologist, 2022 - Wiley Online Library
Phenotypic plasticity is observed widely in plants and often studied with reaction norms for
adult plant or end‐of‐season traits. Uncovering genetic, environmental and developmental …

Genomic selection in plant breeding: Key factors sha** two decades of progress

A Alemu, J Åstrand, OA Montesinos-Lopez… - Molecular Plant, 2024 - cell.com
Genomic selection, the application of genomic prediction (GP) models to select candidate
individuals, has significantly advanced in the past two decades, effectively accelerating …

The role of artificial intelligence in crop improvement

KL Negus, X Li, SM Welch, J Yu - Advances in Agronomy, 2024 - Elsevier
The growing global demands for agricultural goods will require accelerated crop
improvement. High-throughput genomic, phenomic, enviromic and other multi-omic data …

Environmental context of phenotypic plasticity in flowering time in sorghum and rice

T Guo, J Wei, X Li, J Yu - Journal of Experimental Botany, 2024 - academic.oup.com
Phenotypic plasticity is an important topic in biology and evolution. However, how to
generate broadly applicable insights from individual studies remains a challenge. Here, with …

Maize leaf appearance rates: a synthesis from the united states corn belt

CL Dos Santos, LJ Abendroth, JA Coulter… - Frontiers in Plant …, 2022 - frontiersin.org
The relationship between collared leaf number and growing degree days (GDD) is crucial
for predicting maize phenology. Biophysical crop models convert GDD accumulation to leaf …