Molecular mechanisms underlying phytochrome-controlled morphogenesis in plants

M Legris, YÇ Ince, C Fankhauser - Nature communications, 2019 - nature.com
Phytochromes are bilin-binding photosensory receptors which control development over a
broad range of environmental conditions and throughout the whole plant life cycle. Light …

Perspective on alternative splicing and proteome complexity in plants

S Chaudhary, I Jabre, ASN Reddy, D Staiger… - Trends in plant …, 2019 - cell.com
Alternative splicing (AS) generates multiple transcripts from the same gene, however, AS
contribution to proteome complexity remains elusive in plants. AS is prevalent under stress …

Integrated multi-omics framework of the plant response to jasmonic acid

M Zander, MG Lewsey, NM Clark, L Yin, A Bartlett… - Nature plants, 2020 - nature.com
Understanding the systems-level actions of transcriptional responses to hormones provides
insight into how the genome is reprogrammed in response to environmental stimuli. Here …

Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

CPG Calixto, W Guo, AB James, NA Tzioutziou… - The Plant …, 2018 - academic.oup.com
Plants have adapted to tolerate and survive constantly changing environmental conditions
by reprogramming gene expression The dynamics of the contribution of alternative splicing …

Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination

R Narsai, Q Gouil, D Secco, A Srivastava… - Genome biology, 2017 - Springer
Background Seed germination involves progression from complete metabolic dormancy to a
highly active, growing seedling. Many factors regulate germination and these interact …

Alternative splicing as a regulator of early plant development

D Szakonyi, P Duque - Frontiers in plant science, 2018 - frontiersin.org
Most plant genes are interrupted by introns and the corresponding transcripts need to
undergo pre-mRNA splicing to remove these intervening sequences. Alternative splicing …

Population-level exploration of alternative splicing and its unique role in controlling agronomic traits of rice

H Zhang, W Chen, D Zhu, B Zhang, Q Xu, C Shi… - The Plant …, 2024 - academic.oup.com
Alternative splicing (AS) plays crucial roles in regulating various biological processes in
plants. However, the genetic mechanisms underlying AS and its role in controlling important …

Light regulates alternative splicing outcomes via the TOR kinase pathway

S Riegler, L Servi, MR Scarpin, MAG Herz… - Cell Reports, 2021 - cell.com
For plants, light is the source of energy and the most relevant regulator of growth and
adaptations to the environment by inducing changes in gene expression at various levels …

Transcripts from downstream alternative transcription start sites evade uORF-mediated inhibition of gene expression in Arabidopsis

Y Kurihara, Y Makita, M Kawashima… - Proceedings of the …, 2018 - National Acad Sciences
Plants adapt to alterations in light conditions by controlling their gene expression profiles.
Expression of light-inducible genes is transcriptionally induced by transcription factors such …

Does co-transcriptional regulation of alternative splicing mediate plant stress responses?

I Jabre, ASN Reddy, M Kalyna… - Nucleic Acids …, 2019 - academic.oup.com
Plants display exquisite control over gene expression to elicit appropriate responses under
normal and stress conditions. Alternative splicing (AS) of pre-mRNAs, a process that …