Opportunities and challenges in long-read sequencing data analysis
Long-read technologies are overcoming early limitations in accuracy and throughput,
broadening their application domains in genomics. Dedicated analysis tools that take into …
broadening their application domains in genomics. Dedicated analysis tools that take into …
[HTML][HTML] Identifying cell populations with scRNASeq
Single-cell RNASeq (scRNASeq) has emerged as a powerful method for quantifying the
transcriptome of individual cells. However, the data from scRNASeq experiments is often …
transcriptome of individual cells. However, the data from scRNASeq experiments is often …
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue
Single-nuclei RNA sequencing characterizes cell types at the gene level. However,
compared to single-cell approaches, many single-nuclei cDNAs are purely intronic, lack …
compared to single-cell approaches, many single-nuclei cDNAs are purely intronic, lack …
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
High-throughput amplicon sequencing of large genomic regions remains challenging for
short-read technologies. Here, we report a high-throughput amplicon sequencing approach …
short-read technologies. Here, we report a high-throughput amplicon sequencing approach …
Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells
Full-length RNA sequencing (RNA-Seq) has been applied to bulk tissue, cell lines and
sorted cells to characterize transcriptomes,,,,,,,,,,, but applying this technology to single cells …
sorted cells to characterize transcriptomes,,,,,,,,,,, but applying this technology to single cells …
Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells
Understanding gene regulation and function requires a genome-wide method capable of
capturing both gene expression levels and isoform diversity at the single-cell level. Short …
capturing both gene expression levels and isoform diversity at the single-cell level. Short …
Tutorial: guidelines for the experimental design of single-cell RNA sequencing studies
Single-cell RNA sequencing is at the forefront of high-resolution phenoty** experiments
for complex samples. Although this methodology requires specialized equipment and …
for complex samples. Although this methodology requires specialized equipment and …
Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease
Genes encoding cell-surface proteins control nervous system development and are
implicated in neurological disorders. These genes produce alternative mRNA isoforms …
implicated in neurological disorders. These genes produce alternative mRNA isoforms …
The dimensions, dynamics, and relevance of the mammalian noncoding transcriptome
The combination of pervasive transcription and prolific alternative splicing produces a
mammalian transcriptome of great breadth and diversity. The majority of transcribed …
mammalian transcriptome of great breadth and diversity. The majority of transcribed …
The variables on RNA molecules: concert or cacophony? Answers in long-read sequencing
Long-read sequencing has become a widely employed technology that enables a
comprehensive view of RNA transcripts. Here, we discuss the importance of long-read …
comprehensive view of RNA transcripts. Here, we discuss the importance of long-read …