Burning questions for a warming and changing world: 15 unknowns in plant abiotic stress

PE Verslues, J Bailey-Serres, C Brodersen… - The Plant …, 2023 - academic.oup.com
We present unresolved questions in plant abiotic stress biology as posed by 15 research
groups with expertise spanning eco-physiology to cell and molecular biology. Common …

Establishing causality: opportunities of synthetic communities for plant microbiome research

JA Vorholt, C Vogel, CI Carlström, DB Müller - Cell host & microbe, 2017 - cell.com
Plant microbiome research highlights the importance of indigenous microbial communities
for host phenotypes such as growth and health. It aims to discover the molecular basis by …

Mutation bias reflects natural selection in Arabidopsis thaliana

JG Monroe, T Srikant, P Carbonell-Bejerano, C Becker… - Nature, 2022 - nature.com
Since the first half of the twentieth century, evolutionary theory has been dominated by the
idea that mutations occur randomly with respect to their consequences. Here we test this …

The EDS1–PAD4–ADR1 node mediates Arabidopsis pattern-triggered immunity

RN Pruitt, F Locci, F Wanke, L Zhang, SC Saile, A Joe… - Nature, 2021 - nature.com
Plants deploy cell-surface and intracellular leucine rich-repeat domain (LRR) immune
receptors to detect pathogens. LRR receptor kinases and LRR receptor proteins at the …

Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing

M Alonge, L Lebeigle, M Kirsche, K Jenike, S Ou… - Genome biology, 2022 - Springer
Advancing crop genomics requires efficient genetic systems enabled by high-quality
personalized genome assemblies. Here, we introduce RagTag, a toolset for automating …

Genetic diversity loss in the Anthropocene

M Exposito-Alonso, TR Booker, L Czech, L Gillespie… - Science, 2022 - science.org
Anthropogenic habitat loss and climate change are reducing species' geographic ranges,
increasing extinction risk and losses of species' genetic diversity. Although preserving …

Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement

K Gaurav, S Arora, P Silva, J Sánchez-Martín… - Nature …, 2022 - nature.com
Aegilops tauschii, the diploid wild progenitor of the D subgenome of bread wheat, is a
reservoir of genetic diversity for improving bread wheat performance and environmental …

PlantRegMap: charting functional regulatory maps in plants

F Tian, DC Yang, YQ Meng, J **… - Nucleic acids research, 2020 - academic.oup.com
With the goal of charting plant transcriptional regulatory maps (ie transcription factors (TFs),
cis-elements and interactions between them), we have upgraded the TF-centred database …

Genome evolution across 1,011 Saccharomyces cerevisiae isolates

J Peter, M De Chiara, A Friedrich, JX Yue, D Pflieger… - Nature, 2018 - nature.com
Large-scale population genomic surveys are essential to explore the phenotypic diversity of
natural populations. Here we report the whole-genome sequencing and phenoty** of …

A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation

Y Dorone, S Boeynaems, E Flores, B **, S Hateley… - Cell, 2021 - cell.com
Many organisms evolved strategies to survive desiccation. Plant seeds protect dehydrated
embryos from various stressors and can lay dormant for millennia. Hydration is the key …