Direct observation of adaptive tracking on ecological time scales in Drosophila

SM Rudman, SI Greenblum, S Rajpurohit… - Science, 2022 - science.org
Direct observation of evolution in response to natural environmental change can resolve
fundamental questions about adaptation, including its pace, temporal dynamics, and …

Continuously fluctuating selection reveals fine granularity of adaptation

MC Bitter, S Berardi, H Oken, A Huynh, E Lappo… - Nature, 2024 - nature.com
Temporally fluctuating environmental conditions are a ubiquitous feature of natural habitats.
Yet, how finely natural populations adaptively track fluctuating selection pressures via shifts …

Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics

P Kharnaior, JP Tamang - International Journal of Food Microbiology, 2023 - Elsevier
Grep-chhurpi, peha, peron namsing and peruñyaan are lesser-known home-made
fermented soybean foods prepared by the native people of Arunachal Pradesh in India …

grenedalf: population genetic statistics for the next generation of pool sequencing

L Czech, JP Spence, M Expósito-Alonso - Bioinformatics, 2024 - academic.oup.com
Pool sequencing is an efficient method for capturing genome-wide allele frequencies from
multiple individuals, with broad applications such as studying adaptation in Evolve-and …

[HTML][HTML] Contrasting host-parasite population structure: morphology and mitogenomics of a parasitic flatworm on pelagic deepwater cichlid fishes from Lake …

N Kmentová, C Hahn, S Koblmüller, H Zimmermann… - Biology, 2021 - mdpi.com
Simple Summary Species richness in open water areas is generally lower than in coastal
zones. Fish parasites have been targeted as biological tags potentially magnifying biological …

Genomic adaptive potential to cold environments in the invasive red swamp crayfish

DX Sato, Y Matsuda, N Usio, R Funayama… - IScience, 2023 - cell.com
Biological invasion refers to the introduction, spread, and establishment of non-native
species in a novel habitat. The ways in which invasive species successfully colonize new …

Benchmarking the performance of Pool‐seq SNP callers using simulated and real sequencing data

S Guirao‐Rico, J González - Molecular Ecology Resources, 2021 - Wiley Online Library
Population genomics is a fast‐develo** discipline with promising applications in a
growing number of life sciences fields. Advances in sequencing technologies and …

High-throughput estimation of allele frequencies using combined pooled-population sequencing and haplotype-based data processing

M Schneider, A Shrestha, A Ballvora, J Léon - Plant methods, 2022 - Springer
Background In addition to heterogeneity and artificial selection, natural selection is one of
the forces used to combat climate change and improve agrobiodiversity in evolutionary plant …

grenepipe: a flexible, scalable and reproducible pipeline to automate variant calling from sequence reads

L Czech, M Exposito-Alonso - Bioinformatics, 2022 - academic.oup.com
We developed grenepipe, an all-in-one Snakemake workflow to streamline the data
processing from raw high-throughput sequencing data of individuals or populations to …

Induced responses contribute to rapid adaptation of Spirodela polyrhiza to herbivory by Lymnaea stagnalis

A Malacrinò, L Böttner, S Nouere, M Huber… - Communications …, 2024 - nature.com
Herbivory-induced responses in plants are typical examples of phenotypic plasticity, and
their evolution is thought to be driven by herbivory. However, direct evidence of the role of …