Discovering riboswitches: the past and the future

K Kavita, RR Breaker - Trends in biochemical sciences, 2023 - cell.com
Riboswitches are structured noncoding RNA domains used by many bacteria to monitor the
concentrations of target ligands and regulate gene expression accordingly. In the past 20 …

A decade of riboswitches

A Serganov, E Nudler - Cell, 2013 - cell.com
Riboswitches were discovered in 2002 in bacteria as RNA-based intracellular sensors of
vitamin derivatives. During the last decade, naturally occurring RNA sensor elements have …

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

DH Mathews, MD Disney, JL Childs… - Proceedings of the …, 2004 - National Acad Sciences
A dynamic programming algorithm for prediction of RNA secondary structure has been
revised to accommodate folding constraints determined by chemical modification and to …

Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

W Winkler, A Nahvi, RR Breaker - Nature, 2002 - nature.com
Although proteins fulfil most of the requirements that biology has for structural and functional
components such as enzymes and receptors, RNA can also serve in these capacities. For …

Riboswitches and translation control

RR Breaker - Cold Spring Harbor perspectives in biology, 2018 - cshperspectives.cshlp.org
A growing collection of bacterial riboswitch classes is being discovered that sense central
metabolites, coenzymes, and signaling molecules. Included among the various mechanisms …

Prospects for riboswitch discovery and analysis

RR Breaker - Molecular cell, 2011 - cell.com
An expanding number of metabolite-binding riboswitch classes are being discovered in the
noncoding portions of bacterial genomes. Findings over the last decade indicate that …

Gene regulation by riboswitches

M Mandal, RR Breaker - Nature reviews Molecular cell biology, 2004 - nature.com
Riboswitches are complex folded RNA domains that serve as receptors for specific
metabolites. These domains are found in the non-coding portions of various mRNAs, where …

Genetic control by a metabolite binding mRNA

A Nahvi, N Sudarsan, MS Ebert, X Zou, KL Brown… - Chemistry & biology, 2002 - cell.com
Messenger RNAs are typically thought of as passive carriers of genetic information that are
acted upon by protein-or small RNA-regulatory factors and by ribosomes during the process …

[HTML][HTML] Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria

AS Mironov, I Gusarov, R Rafikov, LE Lopez, K Shatalin… - cell, 2002 - cell.com
Thiamin and riboflavin are precursors of essential coenzymes—thiamin pyrophosphate
(TPP) and flavin mononucleotide (FMN)/flavin adenine dinucleotide (FAD), respectively. In …

Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy

M Famulok, JS Hartig, G Mayer - Chemical reviews, 2007 - ACS Publications
Aptamers are single-stranded nucleic acid molecules that possess properties comparable to
those of protein monoclonal antibodies, and thus are clear alternatives to long established …