Discovering riboswitches: the past and the future
Riboswitches are structured noncoding RNA domains used by many bacteria to monitor the
concentrations of target ligands and regulate gene expression accordingly. In the past 20 …
concentrations of target ligands and regulate gene expression accordingly. In the past 20 …
A decade of riboswitches
Riboswitches were discovered in 2002 in bacteria as RNA-based intracellular sensors of
vitamin derivatives. During the last decade, naturally occurring RNA sensor elements have …
vitamin derivatives. During the last decade, naturally occurring RNA sensor elements have …
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
A dynamic programming algorithm for prediction of RNA secondary structure has been
revised to accommodate folding constraints determined by chemical modification and to …
revised to accommodate folding constraints determined by chemical modification and to …
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
Although proteins fulfil most of the requirements that biology has for structural and functional
components such as enzymes and receptors, RNA can also serve in these capacities. For …
components such as enzymes and receptors, RNA can also serve in these capacities. For …
Riboswitches and translation control
RR Breaker - Cold Spring Harbor perspectives in biology, 2018 - cshperspectives.cshlp.org
A growing collection of bacterial riboswitch classes is being discovered that sense central
metabolites, coenzymes, and signaling molecules. Included among the various mechanisms …
metabolites, coenzymes, and signaling molecules. Included among the various mechanisms …
Prospects for riboswitch discovery and analysis
RR Breaker - Molecular cell, 2011 - cell.com
An expanding number of metabolite-binding riboswitch classes are being discovered in the
noncoding portions of bacterial genomes. Findings over the last decade indicate that …
noncoding portions of bacterial genomes. Findings over the last decade indicate that …
Gene regulation by riboswitches
M Mandal, RR Breaker - Nature reviews Molecular cell biology, 2004 - nature.com
Riboswitches are complex folded RNA domains that serve as receptors for specific
metabolites. These domains are found in the non-coding portions of various mRNAs, where …
metabolites. These domains are found in the non-coding portions of various mRNAs, where …
Genetic control by a metabolite binding mRNA
A Nahvi, N Sudarsan, MS Ebert, X Zou, KL Brown… - Chemistry & biology, 2002 - cell.com
Messenger RNAs are typically thought of as passive carriers of genetic information that are
acted upon by protein-or small RNA-regulatory factors and by ribosomes during the process …
acted upon by protein-or small RNA-regulatory factors and by ribosomes during the process …
[HTML][HTML] Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria
Thiamin and riboflavin are precursors of essential coenzymes—thiamin pyrophosphate
(TPP) and flavin mononucleotide (FMN)/flavin adenine dinucleotide (FAD), respectively. In …
(TPP) and flavin mononucleotide (FMN)/flavin adenine dinucleotide (FAD), respectively. In …
Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy
Aptamers are single-stranded nucleic acid molecules that possess properties comparable to
those of protein monoclonal antibodies, and thus are clear alternatives to long established …
those of protein monoclonal antibodies, and thus are clear alternatives to long established …