Linking plant functional genes to rhizosphere microbes: a review

Q Liu, L Cheng, H Nian, J **… - Plant biotechnology …, 2023 - Wiley Online Library
The importance of rhizomicrobiome in plant development, nutrition acquisition and stress
tolerance is unquestionable. Relevant plant genes corresponding to the above functions …

Integration site selection by retroviruses and transposable elements in eukaryotes

T Sultana, A Zamborlini, G Cristofari… - Nature Reviews …, 2017 - nature.com
Transposable elements and retroviruses are found in most genomes, can be pathogenic
and are widely used as gene-delivery and functional genomics tools. Exploring whether …

RNA-directed DNA methylation

RM Erdmann, CL Picard - PLoS genetics, 2020 - journals.plos.org
RNA-directed DNA methylation (RdDM) is a biological process in which non-coding RNA
molecules direct the addition of DNA methylation to specific DNA sequences. The RdDM …

LTR_retriever: a highly accurate and sensitive program for identification of long terminal repeat retrotransposons

S Ou, N Jiang - Plant physiology, 2018 - academic.oup.com
Long terminal repeat retrotransposons (LTR-RTs) are prevalent in plant genomes. The
identification of LTR-RTs is critical for achieving high-quality gene annotation. Based on the …

The epigenetic control of the transposable element life cycle in plant genomes and beyond

P Liu, D Cuerda-Gil, S Shahid… - Annual Review of …, 2022 - annualreviews.org
Within the life cycle of a living organism, another life cycle exists for the selfish genome
inhabitants, which are called transposable elements (TEs). These mobile sequences invade …

Plant hormone ethylene: A leading edge in conferring drought stress tolerance

F Nazir, P Peter, R Gupta, S Kumari… - Physiologia …, 2024 - Wiley Online Library
Agricultural sufficient productivity is of paramount importance for ensuring food security and
conserving soil health to support the world's agronomy. Climatic abruptions have been …

[HTML][HTML] Transposons: a blessing curse

MJ Dubin, OM Scheid, C Becker - Current opinion in plant biology, 2018 - Elsevier
Highlights•TEs are a key source of variation and have an important role in gene
regulation.•Stress induced activation of some TE families can result in new insertions.•New …

Epigenetics: a catalyst of plant immunity against pathogens

A Hannan Parker, SW Wilkinson, J Ton - New Phytologist, 2022 - Wiley Online Library
The plant immune system protects against pests and diseases. The recognition of stress‐
related molecular patterns triggers localised immune responses, which are often followed by …

Transposable elements orchestrate subgenome-convergent and-divergent transcription in common wheat

Y Zhang, Z Li, J Liu, Y Zhang, L Ye, Y Peng… - Nature …, 2022 - nature.com
The success of common wheat as a global staple crop was largely attributed to its genomic
diversity and redundancy due to the merge of different genomes, giving rise to the major …

The dynamism of transposon methylation for plant development and stress adaptation

M Ramakrishnan, L Satish, R Kalendar… - International Journal of …, 2021 - mdpi.com
Plant development processes are regulated by epigenetic alterations that shape nuclear
structure, gene expression, and phenotypic plasticity; these alterations can provide the plant …