Modelling cell metabolism: a review on constraint-based steady-state and kinetic approaches

M Yasemi, M Jolicoeur - Processes, 2021 - mdpi.com
Studying cell metabolism serves a plethora of objectives such as the enhancement of
bioprocess performance, and advancement in the understanding of cell biology, of drug …

NNV: the neural network verification tool for deep neural networks and learning-enabled cyber-physical systems

HD Tran, X Yang, D Manzanas Lopez, P Musau… - … on Computer Aided …, 2020 - Springer
This paper presents the Neural Network Verification (NNV) software tool, a set-based
verification framework for deep neural networks (DNNs) and learning-enabled cyber …

[PDF][PDF] Selected Topics in Mathematical Modeling: Some New Trends

N Kyurkchiev - … to Academician Blagovest Sendov (1932-2020) …, 2020 - researchgate.net
1.1 Introduction 12 1.2 Preliminaries 13 1.3 Main Results 14 1.3. 1 Approximating the” real
wealth data” 18 1.3. 2 Approximating the” growth data (mean height) of sunflower plants” 18 …

Phenotypic memory in quorum sensing

G Ostovar, JQ Boedicker - PLoS Computational Biology, 2024 - journals.plos.org
Quorum sensing (QS) is a regulatory mechanism used by bacteria to coordinate group
behavior in response to high cell densities. During QS, cells monitor the concentration of …

On the chemical meaning of some growth models possessing Gompertzian‐type property

R Anguelov, M Borisov, A Iliev… - … Methods in the …, 2018 - Wiley Online Library
Growth models are often used when modelling various processes in life sciences, ecology,
demography, social sciences, etc. Dynamical growth models are usually formulated in terms …

Biochemical parameter estimation vs. benchmark functions: A comparative study of optimization performance and representation design

A Tangherloni, S Spolaor, P Cazzaniga, D Besozzi… - Applied Soft …, 2019 - Elsevier
Computational Intelligence methods, which include Evolutionary Computation and Swarm
Intelligence, can efficiently and effectively identify optimal solutions to complex optimization …

[BOOK][B] Some New Logistic Differential Models: Properties and Applications

V Kyurkchiev, A Iliev, A Rahnev, N Kyurkchiev - 2019 - researchgate.net
Some New Logistic Differential Models Page 1 Vesselin Kyurkchiev Anton Iliev Asen Rahnev
Nikolay Kyurkchiev Some New Logistic Differential Models Properties and Applications In this …

New approach to the stability of chemical reaction networks: Piecewise linear in rates Lyapunov functions

MA Al-Radhawi, D Angeli - IEEE Transactions on Automatic …, 2015 - ieeexplore.ieee.org
Piecewise-linear in rates (PWLR) Lyapunov functions are introduced for a class of chemical
reaction networks (CRNs). In addition to their simple structure, these functions are robust …

[HTML][HTML] Nonlinearity and anthocyanin colour expression: A mathematical analysis of anthocyanin association kinetics and equilibria

RA Tindal, DW Jeffery, RA Muhlack - Food Research International, 2024 - Elsevier
Anthocyanins are polyphenolic compounds that provide pigmentation in plants as reflected
by pH-dependent structural transformations between the red flavylium cation, purple …

Computational intelligence for parameter estimation of biochemical systems

MS Nobile, A Tangherloni, L Rundo… - 2018 IEEE congress …, 2018 - ieeexplore.ieee.org
In the field of Systems Biology, simulating the dynamics of biochemical models represents
one of the most effective methodologies to understand the functioning of cellular processes …