Multifaceted roles of flavonoids mediating plant-microbe interactions

L Wang, M Chen, PY Lam, F Dini-Andreote, L Dai… - Microbiome, 2022 - Springer
Plant-microbe interactions dynamically affect plant growth, health, and development. The
mechanisms underpinning these associations are—to a large extent—mediated by …

The root microbiome: Community assembly and its contributions to plant fitness

B Bai, W Liu, X Qiu, J Zhang, J Zhang… - Journal of Integrative …, 2022 - Wiley Online Library
The root microbiome refers to the community of microbes living in association with a plant's
roots, and includes mutualists, pathogens, and commensals. Here we focus on recent …

Dynamic root microbiome sustains soybean productivity under unbalanced fertilization

M Wang, AH Ge, X Ma, X Wang, Q **e, L Wang… - Nature …, 2024 - nature.com
Root-associated microbiomes contribute to plant growth and health, and are dynamically
affected by plant development and changes in the soil environment. However, how different …

EasyAmplicon: An easy‐to‐use, open‐source, reproducible, and community‐based pipeline for amplicon data analysis in microbiome research

YX Liu, L Chen, T Ma, X Li, M Zheng, X Zhou, L Chen… - Imeta, 2023 - Wiley Online Library
It is difficult for beginners to learn and use amplicon analysis software because there are so
many software tools to choose from, and all of them need multiple steps of operation. Herein …

Plant abiotic stress response and nutrient use efficiency

Z Gong, L **ong, H Shi, S Yang… - Science China Life …, 2020 - Springer
Abiotic stresses and soil nutrient limitations are major environmental conditions that reduce
plant growth, productivity and quality. Plants have evolved mechanisms to perceive these …

A practical guide to amplicon and metagenomic analysis of microbiome data

YX Liu, Y Qin, T Chen, M Lu, X Qian, X Guo… - Protein & cell, 2021 - academic.oup.com
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …

Plant developmental stage drives the differentiation in ecological role of the maize microbiome

C **ong, BK Singh, JZ He, YL Han, PP Li, LH Wan… - Microbiome, 2021 - Springer
Background Plants live with diverse microbial communities which profoundly affect multiple
facets of host performance, but if and how host development impacts the assembly, functions …

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

J Zhang, YX Liu, N Zhang, B Hu, T **, H Xu… - Nature …, 2019 - nature.com
Nitrogen-use efficiency of indica varieties of rice is superior to that of japonica varieties. We
apply 16S ribosomal RNA gene profiling to characterize root microbiota of 68 indica and 27 …

Rhizosphere microbiome assembly and its impact on plant growth

Q Qu, Z Zhang, W Peijnenburg, W Liu… - Journal of agricultural …, 2020 - ACS Publications
Microorganisms colonizing the plant rhizosphere provide a number of beneficial functions
for their host. Although an increasing number of investigations clarified the great functional …

Prolonged drought imparts lasting compositional changes to the rice root microbiome

C Santos-Medellín, Z Liechty, J Edwards, B Nguyen… - Nature plants, 2021 - nature.com
Microbial symbioses can mitigate drought stress in crops but harnessing these beneficial
interactions will require an in-depth understanding of root microbiome responses to drought …