The living interface between synthetic biology and biomaterial design

AP Liu, EA Appel, PD Ashby, BM Baker, E Franco… - Nature materials, 2022 - nature.com
Recent far-reaching advances in synthetic biology have yielded exciting tools for the
creation of new materials. Conversely, advances in the fundamental understanding of soft …

Reproducibility in systems biology modelling

K Tiwari, S Kananathan, MG Roberts… - Molecular systems …, 2021 - embopress.org
Reproducibility of scientific results is a key element of science and credibility. The lack of
reproducibility across many scientific fields has emerged as an important concern. In this …

Immune digital twins for complex human pathologies: applications, limitations, and challenges

A Niarakis, R Laubenbacher, G An, Y Ilan… - NPJ systems biology …, 2024 - nature.com
Digital twins represent a key technology for precision health. Medical digital twins consist of
computational models that represent the health state of individual patients over time …

Automatic reuse, adaption, and execution of simulation experiments via provenance patterns

P Wilsdorf, A Wolpers, J Hilton, F Haack… - ACM Transactions on …, 2023 - dl.acm.org
Simulation experiments are typically conducted repeatedly during the model development
process, for example, to revalidate if a behavioral property still holds after several model …

Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024

M Golebiewski, G Bader, P Gleeson… - Journal of Integrative …, 2024 - degruyter.com
The “COmputational Modeling in BIology NEtwork”(COMBINE) initiative aims to harmonise
the development of diverse community standards for computational models in biology [1, 2] …

Bayesian estimation reveals that reproducible models in Systems Biology get more citations

S Höpfl, J Pleiss, NE Radde - Scientific Reports, 2023 - nature.com
Abstract The Systems Biology community has taken numerous actions to develop data and
modeling standards towards FAIR data and model handling. Nevertheless, the debate about …

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022

M König, P Gleeson, M Golebiewski… - Journal of Integrative …, 2023 - degruyter.com
This special issue of the Journal of Integrative Bioinformatics contains updated
specifications of COMBINE standards in systems and synthetic biology. The 2022 special …

Specifications of standards in systems and synthetic biology: status and developments in 2020

F Schreiber, B Sommer, T Czauderna… - Journal of integrative …, 2020 - degruyter.com
Specifications of standards in systems and synthetic biology: status and developments in 2020
Skip to content Should you have institutional access? Here's how to get it ... De Gruyter € EUR …

The Physiome Project and Digital Twins

P Hunter, B de Bono, D Brooks… - IEEE Reviews in …, 2024 - ieeexplore.ieee.org
Interest in the concept of a virtual human model that can encompass human physiology and
anatomy on a biophysical (mechanistic) basis, and can assist with the clinical diagnosis and …

Systems Biology in ELIXIR: modelling in the spotlight

VM Dos Santos, M Anton, B Szomolay… - …, 2024 - pmc.ncbi.nlm.nih.gov
In this white paper, we describe the founding of a new ELIXIR Community-the Systems
Biology Community-and its proposed future contributions to both ELIXIR and the broader …